Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3373 and GFF3374 are separated by 65 nucleotides GFF3374 and GFF3375 are separated by 118 nucleotides GFF3375 and GFF3376 are separated by 22 nucleotides
GFF3373 - Citrate lyase beta chain (EC 4.1.3.6), at 257,460 to 258,464
GFF3373
GFF3374 - Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99), at 258,530 to 261,130
GFF3374
GFF3375 - Rhodanese-related sulfurtransferases, at 261,249 to 261,779
GFF3375
GFF3376 - Transcriptional regulator, ArsR family, at 261,802 to 262,110
GFF3376
Position (kb) 258
259
260
261
262 Strain fitness (log2 ratio) -2
-1
0
1
2 at 257.535 kb on + strand at 257.536 kb on - strand at 258.131 kb on - strand, within GFF3373 at 258.196 kb on - strand, within GFF3373 at 258.196 kb on - strand, within GFF3373 at 258.360 kb on + strand, within GFF3373 at 258.361 kb on - strand, within GFF3373 at 258.366 kb on + strand at 258.366 kb on + strand at 258.367 kb on - strand at 258.475 kb on - strand at 258.828 kb on - strand, within GFF3374 at 259.248 kb on - strand, within GFF3374 at 259.248 kb on - strand, within GFF3374 at 259.697 kb on - strand, within GFF3374 at 259.754 kb on + strand, within GFF3374 at 260.402 kb on + strand, within GFF3374 at 260.403 kb on - strand, within GFF3374 at 260.403 kb on - strand, within GFF3374 at 260.804 kb on + strand, within GFF3374 at 260.954 kb on + strand at 260.954 kb on + strand at 260.955 kb on - strand at 261.021 kb on - strand at 261.021 kb on - strand at 261.065 kb on + strand at 261.071 kb on + strand at 261.071 kb on + strand at 261.071 kb on + strand at 261.071 kb on + strand at 261.072 kb on - strand at 261.072 kb on - strand at 261.072 kb on - strand at 261.072 kb on - strand at 261.099 kb on - strand at 261.099 kb on - strand at 261.099 kb on - strand at 261.129 kb on - strand at 261.523 kb on + strand, within GFF3375 at 261.523 kb on + strand, within GFF3375 at 261.523 kb on + strand, within GFF3375 at 261.523 kb on + strand, within GFF3375 at 261.524 kb on - strand, within GFF3375 at 261.866 kb on + strand, within GFF3376 at 262.120 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 257,535 + -1.2 257,536 - -0.1 258,131 - GFF3373 0.67 -1.9 258,196 - GFF3373 0.73 +0.5 258,196 - GFF3373 0.73 +0.1 258,360 + GFF3373 0.90 -0.4 258,361 - GFF3373 0.90 +1.2 258,366 + +1.2 258,366 + +0.0 258,367 - -0.4 258,475 - -0.5 258,828 - GFF3374 0.11 +1.2 259,248 - GFF3374 0.28 -0.1 259,248 - GFF3374 0.28 -0.8 259,697 - GFF3374 0.45 -2.0 259,754 + GFF3374 0.47 -0.4 260,402 + GFF3374 0.72 +0.0 260,403 - GFF3374 0.72 -0.8 260,403 - GFF3374 0.72 -1.0 260,804 + GFF3374 0.87 +0.6 260,954 + -1.0 260,954 + -1.4 260,955 - -1.1 261,021 - -1.3 261,021 - -1.6 261,065 + +0.2 261,071 + +0.3 261,071 + +0.6 261,071 + +0.1 261,071 + -0.8 261,072 - +0.2 261,072 - -0.0 261,072 - +0.2 261,072 - +1.1 261,099 - +1.8 261,099 - +0.2 261,099 - +0.9 261,129 - -0.1 261,523 + GFF3375 0.52 -0.6 261,523 + GFF3375 0.52 -0.4 261,523 + GFF3375 0.52 -0.1 261,523 + GFF3375 0.52 -0.3 261,524 - GFF3375 0.52 -0.2 261,866 + GFF3376 0.21 +1.2 262,120 - -0.4
Or see this region's nucleotide sequence