Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3271 and GFF3272 are separated by 91 nucleotides GFF3272 and GFF3273 are separated by 133 nucleotides GFF3273 and GFF3274 overlap by 8 nucleotides GFF3274 and GFF3275 are separated by 149 nucleotides
GFF3271 - Sensor histidine kinase, at 154,571 to 155,896
GFF3271
GFF3272 - DNA-binding response regulator, LuxR family, at 155,988 to 156,623
GFF3272
GFF3273 - Carbon starvation protein A, at 156,757 to 158,829
GFF3273
GFF3274 - COG2879, Hypothetical small protein yjiX, at 158,822 to 159,043
GFF3274
GFF3275 - Urea ABC transporter, substrate binding protein UrtA, at 159,193 to 160,482
GFF3275
Position (kb) 156
157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2 at 156.255 kb on + strand, within GFF3272 at 156.256 kb on - strand, within GFF3272 at 156.256 kb on - strand, within GFF3272 at 156.307 kb on - strand, within GFF3272 at 156.591 kb on + strand at 156.628 kb on + strand at 156.628 kb on + strand at 156.639 kb on - strand at 156.639 kb on - strand at 156.910 kb on + strand at 156.910 kb on + strand at 156.910 kb on + strand at 156.911 kb on - strand at 156.911 kb on - strand at 156.911 kb on - strand at 156.911 kb on - strand at 157.012 kb on + strand, within GFF3273 at 157.012 kb on + strand, within GFF3273 at 157.012 kb on + strand, within GFF3273 at 157.012 kb on + strand, within GFF3273 at 157.012 kb on + strand, within GFF3273 at 157.013 kb on - strand, within GFF3273 at 157.013 kb on - strand, within GFF3273 at 157.013 kb on - strand, within GFF3273 at 157.093 kb on + strand, within GFF3273 at 157.381 kb on + strand, within GFF3273 at 157.382 kb on - strand, within GFF3273 at 157.507 kb on + strand, within GFF3273 at 157.507 kb on + strand, within GFF3273 at 157.597 kb on + strand, within GFF3273 at 157.598 kb on - strand, within GFF3273 at 157.598 kb on - strand, within GFF3273 at 157.924 kb on + strand, within GFF3273 at 157.925 kb on - strand, within GFF3273 at 158.332 kb on + strand, within GFF3273 at 158.342 kb on - strand, within GFF3273 at 158.729 kb on - strand at 158.879 kb on + strand, within GFF3274 at 158.922 kb on - strand, within GFF3274 at 158.931 kb on - strand, within GFF3274 at 158.931 kb on - strand, within GFF3274 at 158.931 kb on - strand, within GFF3274 at 158.978 kb on + strand, within GFF3274 at 158.978 kb on + strand, within GFF3274 at 158.979 kb on - strand, within GFF3274 at 158.979 kb on - strand, within GFF3274 at 158.979 kb on - strand, within GFF3274 at 159.072 kb on + strand at 159.073 kb on - strand at 159.073 kb on - strand at 159.076 kb on + strand at 159.097 kb on + strand at 159.098 kb on - strand at 159.098 kb on - strand at 159.592 kb on + strand, within GFF3275 at 159.638 kb on - strand, within GFF3275 at 159.739 kb on + strand, within GFF3275 at 159.739 kb on + strand, within GFF3275 at 159.740 kb on - strand, within GFF3275 at 159.824 kb on - strand, within GFF3275
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 156,255 + GFF3272 0.42 -0.9 156,256 - GFF3272 0.42 -0.2 156,256 - GFF3272 0.42 -1.1 156,307 - GFF3272 0.50 -2.1 156,591 + -2.2 156,628 + +1.8 156,628 + -0.1 156,639 - -0.7 156,639 - -0.9 156,910 + -1.1 156,910 + +0.1 156,910 + -1.1 156,911 - -0.2 156,911 - -0.9 156,911 - +0.7 156,911 - -0.6 157,012 + GFF3273 0.12 -1.2 157,012 + GFF3273 0.12 -0.7 157,012 + GFF3273 0.12 -0.2 157,012 + GFF3273 0.12 -1.4 157,012 + GFF3273 0.12 -0.8 157,013 - GFF3273 0.12 -1.1 157,013 - GFF3273 0.12 -0.4 157,013 - GFF3273 0.12 +0.3 157,093 + GFF3273 0.16 -0.2 157,381 + GFF3273 0.30 -1.0 157,382 - GFF3273 0.30 -0.6 157,507 + GFF3273 0.36 -1.4 157,507 + GFF3273 0.36 -0.0 157,597 + GFF3273 0.41 -0.5 157,598 - GFF3273 0.41 -1.1 157,598 - GFF3273 0.41 -0.2 157,924 + GFF3273 0.56 -1.5 157,925 - GFF3273 0.56 +0.2 158,332 + GFF3273 0.76 -0.8 158,342 - GFF3273 0.76 -0.0 158,729 - +0.4 158,879 + GFF3274 0.26 +0.6 158,922 - GFF3274 0.45 -0.6 158,931 - GFF3274 0.49 +0.1 158,931 - GFF3274 0.49 -1.0 158,931 - GFF3274 0.49 -0.2 158,978 + GFF3274 0.70 -1.1 158,978 + GFF3274 0.70 -1.1 158,979 - GFF3274 0.71 +0.5 158,979 - GFF3274 0.71 -0.4 158,979 - GFF3274 0.71 -0.9 159,072 + -0.5 159,073 - -0.0 159,073 - +1.0 159,076 + +0.1 159,097 + -0.3 159,098 - -0.6 159,098 - -0.9 159,592 + GFF3275 0.31 -0.4 159,638 - GFF3275 0.34 -0.0 159,739 + GFF3275 0.42 +0.2 159,739 + GFF3275 0.42 +0.5 159,740 - GFF3275 0.42 -0.5 159,824 - GFF3275 0.49 +0.1
Or see this region's nucleotide sequence