Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3244 and GFF3245 are separated by 22 nucleotides GFF3245 and GFF3246 are separated by 82 nucleotides GFF3246 and GFF3247 are separated by 61 nucleotides GFF3247 and GFF3248 are separated by 19 nucleotides
GFF3244 - Rhodanese-related sulfurtransferases, at 127,228 to 127,755
GFF3244
GFF3245 - Transcriptional regulator, ArsR family, at 127,778 to 128,089
GFF3245
GFF3246 - Zn-dependent hydrolases, including glyoxylases, at 128,172 to 129,041
GFF3246
GFF3247 - major facilitator superfamily MFS_1, at 129,103 to 129,444
GFF3247
GFF3248 - Sulfate permease, at 129,464 to 131,098
GFF3248
Position (kb) 128
129
130 Strain fitness (log2 ratio) -1
0
1 at 127.502 kb on + strand, within GFF3244 at 127.502 kb on + strand, within GFF3244 at 127.502 kb on + strand, within GFF3244 at 127.503 kb on - strand, within GFF3244 at 127.503 kb on - strand, within GFF3244 at 127.503 kb on - strand, within GFF3244 at 127.503 kb on - strand, within GFF3244 at 127.618 kb on + strand, within GFF3244 at 127.842 kb on + strand, within GFF3245 at 127.842 kb on + strand, within GFF3245 at 127.842 kb on + strand, within GFF3245 at 127.843 kb on - strand, within GFF3245 at 127.843 kb on - strand, within GFF3245 at 127.869 kb on + strand, within GFF3245 at 128.100 kb on - strand at 128.123 kb on - strand at 128.229 kb on + strand at 128.229 kb on + strand at 128.229 kb on + strand at 128.229 kb on + strand at 128.229 kb on + strand at 128.229 kb on + strand at 128.229 kb on + strand at 128.230 kb on - strand at 128.230 kb on - strand at 128.230 kb on - strand at 128.230 kb on - strand at 128.230 kb on - strand at 128.286 kb on + strand, within GFF3246 at 128.418 kb on + strand, within GFF3246 at 128.419 kb on - strand, within GFF3246 at 128.419 kb on - strand, within GFF3246 at 128.628 kb on + strand, within GFF3246 at 128.680 kb on - strand, within GFF3246 at 128.727 kb on + strand, within GFF3246 at 128.727 kb on + strand, within GFF3246 at 128.728 kb on - strand, within GFF3246 at 128.728 kb on - strand, within GFF3246 at 128.790 kb on + strand, within GFF3246 at 128.790 kb on + strand, within GFF3246 at 128.791 kb on - strand, within GFF3246 at 128.791 kb on - strand, within GFF3246 at 128.814 kb on + strand, within GFF3246 at 128.814 kb on + strand, within GFF3246 at 128.814 kb on + strand, within GFF3246 at 128.814 kb on + strand, within GFF3246 at 128.815 kb on - strand, within GFF3246 at 129.504 kb on + strand at 129.750 kb on + strand, within GFF3248 at 129.769 kb on - strand, within GFF3248 at 129.898 kb on - strand, within GFF3248 at 130.031 kb on - strand, within GFF3248
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 127,502 + GFF3244 0.52 -0.3 127,502 + GFF3244 0.52 +0.5 127,502 + GFF3244 0.52 -0.3 127,503 - GFF3244 0.52 +0.2 127,503 - GFF3244 0.52 +0.5 127,503 - GFF3244 0.52 -0.7 127,503 - GFF3244 0.52 -0.1 127,618 + GFF3244 0.74 +0.2 127,842 + GFF3245 0.21 +0.4 127,842 + GFF3245 0.21 -0.1 127,842 + GFF3245 0.21 +0.4 127,843 - GFF3245 0.21 -0.5 127,843 - GFF3245 0.21 -0.1 127,869 + GFF3245 0.29 -0.3 128,100 - -0.5 128,123 - +0.1 128,229 + +0.2 128,229 + +1.0 128,229 + -0.2 128,229 + -0.0 128,229 + -1.2 128,229 + -0.6 128,229 + -0.5 128,230 - +0.2 128,230 - -0.3 128,230 - +0.2 128,230 - +0.2 128,230 - +0.7 128,286 + GFF3246 0.13 -0.2 128,418 + GFF3246 0.28 -0.2 128,419 - GFF3246 0.28 -0.4 128,419 - GFF3246 0.28 -0.4 128,628 + GFF3246 0.52 +0.1 128,680 - GFF3246 0.58 -0.5 128,727 + GFF3246 0.64 -0.4 128,727 + GFF3246 0.64 +0.3 128,728 - GFF3246 0.64 -0.9 128,728 - GFF3246 0.64 -0.4 128,790 + GFF3246 0.71 -0.1 128,790 + GFF3246 0.71 +0.2 128,791 - GFF3246 0.71 -0.1 128,791 - GFF3246 0.71 -0.0 128,814 + GFF3246 0.74 +0.8 128,814 + GFF3246 0.74 +0.1 128,814 + GFF3246 0.74 +0.0 128,814 + GFF3246 0.74 +0.4 128,815 - GFF3246 0.74 +0.6 129,504 + -0.4 129,750 + GFF3248 0.17 +0.0 129,769 - GFF3248 0.19 +1.2 129,898 - GFF3248 0.27 -0.3 130,031 - GFF3248 0.35 +0.1
Or see this region's nucleotide sequence