Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2956

Experiment: Ying_OrganicAcid7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2955 and GFF2956 are separated by 78 nucleotidesGFF2956 and GFF2957 overlap by 4 nucleotides GFF2955 - Transcriptional regulator, IclR family, at 33,989 to 34,807 GFF2955 GFF2956 - L-lactate dehydrogenase (EC 1.1.2.3), at 34,886 to 36,121 GFF2956 GFF2957 - TRAP transporter solute receptor, unknown substrate 5, at 36,118 to 37,131 GFF2957 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -1 0 1 2at 33.893 kb on + strandat 33.893 kb on + strandat 33.893 kb on + strandat 33.894 kb on - strandat 34.229 kb on + strand, within GFF2955at 34.229 kb on + strand, within GFF2955at 34.229 kb on + strand, within GFF2955at 34.229 kb on + strand, within GFF2955at 34.229 kb on + strand, within GFF2955at 34.229 kb on - strand, within GFF2955at 34.230 kb on - strand, within GFF2955at 34.230 kb on - strand, within GFF2955at 34.356 kb on - strand, within GFF2955at 34.356 kb on - strand, within GFF2955at 34.373 kb on + strand, within GFF2955at 34.373 kb on + strand, within GFF2955at 34.373 kb on + strand, within GFF2955at 34.373 kb on + strand, within GFF2955at 34.373 kb on + strand, within GFF2955at 34.373 kb on + strand, within GFF2955at 34.374 kb on - strand, within GFF2955at 34.374 kb on - strand, within GFF2955at 34.374 kb on - strand, within GFF2955at 34.374 kb on - strand, within GFF2955at 34.425 kb on - strand, within GFF2955at 34.425 kb on - strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.581 kb on - strand, within GFF2955at 34.581 kb on - strand, within GFF2955at 34.581 kb on - strand, within GFF2955at 34.581 kb on - strand, within GFF2955at 34.705 kb on + strand, within GFF2955at 34.719 kb on - strand, within GFF2955at 34.719 kb on - strand, within GFF2955at 34.719 kb on - strand, within GFF2955at 34.792 kb on + strandat 34.793 kb on - strandat 34.793 kb on - strandat 35.100 kb on - strand, within GFF2956at 35.279 kb on + strand, within GFF2956at 35.279 kb on + strand, within GFF2956at 35.279 kb on + strand, within GFF2956at 35.280 kb on - strand, within GFF2956at 35.280 kb on - strand, within GFF2956at 35.280 kb on - strand, within GFF2956at 35.280 kb on - strand, within GFF2956at 35.481 kb on - strand, within GFF2956at 35.525 kb on + strand, within GFF2956at 35.525 kb on + strand, within GFF2956at 35.526 kb on - strand, within GFF2956at 35.567 kb on + strand, within GFF2956at 35.567 kb on + strand, within GFF2956at 35.567 kb on + strand, within GFF2956at 35.567 kb on + strand, within GFF2956at 35.567 kb on + strand, within GFF2956at 35.567 kb on + strand, within GFF2956at 35.568 kb on - strand, within GFF2956at 35.568 kb on - strand, within GFF2956at 36.020 kb on + strandat 36.020 kb on + strandat 36.020 kb on + strandat 36.020 kb on + strandat 36.160 kb on + strandat 36.160 kb on + strandat 36.161 kb on - strandat 36.238 kb on + strand, within GFF2957at 36.238 kb on + strand, within GFF2957at 36.238 kb on + strand, within GFF2957at 36.239 kb on - strand, within GFF2957at 36.239 kb on - strand, within GFF2957at 36.245 kb on - strand, within GFF2957at 36.245 kb on - strand, within GFF2957at 36.245 kb on - strand, within GFF2957at 36.245 kb on - strand, within GFF2957at 36.245 kb on - strand, within GFF2957at 36.245 kb on - strand, within GFF2957at 36.538 kb on + strand, within GFF2957at 36.539 kb on - strand, within GFF2957at 36.571 kb on + strand, within GFF2957at 36.571 kb on + strand, within GFF2957at 36.571 kb on + strand, within GFF2957at 36.571 kb on + strand, within GFF2957at 36.572 kb on - strand, within GFF2957at 36.572 kb on - strand, within GFF2957at 36.572 kb on - strand, within GFF2957at 36.808 kb on + strand, within GFF2957at 36.809 kb on - strand, within GFF2957at 36.809 kb on - strand, within GFF2957at 36.809 kb on - strand, within GFF2957at 36.809 kb on - strand, within GFF2957at 36.814 kb on + strand, within GFF2957at 37.055 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
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33,893 + -0.0
33,893 + +0.2
33,893 + +0.3
33,894 - +0.8
34,229 + GFF2955 0.29 -0.2
34,229 + GFF2955 0.29 +0.0
34,229 + GFF2955 0.29 +1.3
34,229 + GFF2955 0.29 +0.0
34,229 + GFF2955 0.29 -0.7
34,229 - GFF2955 0.29 +0.8
34,230 - GFF2955 0.29 +0.7
34,230 - GFF2955 0.29 +0.5
34,356 - GFF2955 0.45 +0.3
34,356 - GFF2955 0.45 -0.4
34,373 + GFF2955 0.47 -0.9
34,373 + GFF2955 0.47 -0.1
34,373 + GFF2955 0.47 -0.1
34,373 + GFF2955 0.47 -0.1
34,373 + GFF2955 0.47 +0.1
34,373 + GFF2955 0.47 +1.0
34,374 - GFF2955 0.47 -1.0
34,374 - GFF2955 0.47 +0.1
34,374 - GFF2955 0.47 +0.3
34,374 - GFF2955 0.47 -1.7
34,425 - GFF2955 0.53 +0.3
34,425 - GFF2955 0.53 +0.1
34,580 + GFF2955 0.72 -0.4
34,580 + GFF2955 0.72 -1.0
34,580 + GFF2955 0.72 +1.1
34,580 + GFF2955 0.72 +0.0
34,580 + GFF2955 0.72 +1.9
34,580 + GFF2955 0.72 +0.3
34,580 + GFF2955 0.72 +0.2
34,580 + GFF2955 0.72 +0.0
34,580 + GFF2955 0.72 -0.5
34,580 + GFF2955 0.72 -0.5
34,581 - GFF2955 0.72 +0.1
34,581 - GFF2955 0.72 +0.1
34,581 - GFF2955 0.72 +0.3
34,581 - GFF2955 0.72 -0.2
34,705 + GFF2955 0.87 +0.2
34,719 - GFF2955 0.89 +0.1
34,719 - GFF2955 0.89 -0.1
34,719 - GFF2955 0.89 +0.7
34,792 + +0.6
34,793 - -0.6
34,793 - +0.2
35,100 - GFF2956 0.17 +0.2
35,279 + GFF2956 0.32 +1.3
35,279 + GFF2956 0.32 +1.1
35,279 + GFF2956 0.32 -0.3
35,280 - GFF2956 0.32 +0.8
35,280 - GFF2956 0.32 -0.1
35,280 - GFF2956 0.32 -0.4
35,280 - GFF2956 0.32 +0.8
35,481 - GFF2956 0.48 +1.1
35,525 + GFF2956 0.52 +0.3
35,525 + GFF2956 0.52 +1.7
35,526 - GFF2956 0.52 +0.4
35,567 + GFF2956 0.55 +0.4
35,567 + GFF2956 0.55 -0.1
35,567 + GFF2956 0.55 +0.0
35,567 + GFF2956 0.55 +0.1
35,567 + GFF2956 0.55 -0.8
35,567 + GFF2956 0.55 -0.5
35,568 - GFF2956 0.55 +0.8
35,568 - GFF2956 0.55 -0.0
36,020 + -0.7
36,020 + -0.3
36,020 + -0.5
36,020 + -0.0
36,160 + -0.7
36,160 + -1.3
36,161 - -0.8
36,238 + GFF2957 0.12 +0.2
36,238 + GFF2957 0.12 -0.1
36,238 + GFF2957 0.12 -0.0
36,239 - GFF2957 0.12 -0.1
36,239 - GFF2957 0.12 -0.1
36,245 - GFF2957 0.13 -0.1
36,245 - GFF2957 0.13 +0.3
36,245 - GFF2957 0.13 +0.0
36,245 - GFF2957 0.13 +0.1
36,245 - GFF2957 0.13 -0.3
36,245 - GFF2957 0.13 -1.3
36,538 + GFF2957 0.41 +0.6
36,539 - GFF2957 0.42 -0.2
36,571 + GFF2957 0.45 +0.7
36,571 + GFF2957 0.45 +0.0
36,571 + GFF2957 0.45 -0.1
36,571 + GFF2957 0.45 -0.1
36,572 - GFF2957 0.45 +0.2
36,572 - GFF2957 0.45 +0.2
36,572 - GFF2957 0.45 -1.3
36,808 + GFF2957 0.68 -0.5
36,809 - GFF2957 0.68 -0.0
36,809 - GFF2957 0.68 -0.2
36,809 - GFF2957 0.68 +1.3
36,809 - GFF2957 0.68 +1.2
36,814 + GFF2957 0.69 +0.6
37,055 - +0.3

Or see this region's nucleotide sequence