Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2881 and GFF2882 are separated by 24 nucleotides GFF2882 and GFF2883 are separated by 19 nucleotides GFF2883 and GFF2884 are separated by 13 nucleotides
GFF2881 - Urea ABC transporter, permease protein UrtB, at 471,904 to 472,818
GFF2881
GFF2882 - Urea ABC transporter, permease protein UrtC, at 472,843 to 474,051
GFF2882
GFF2883 - Urea ABC transporter, ATPase protein UrtD, at 474,071 to 474,814
GFF2883
GFF2884 - Urea ABC transporter, ATPase protein UrtE, at 474,828 to 475,517
GFF2884
Position (kb) 472
473
474
475 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 472.124 kb on - strand, within GFF2881 at 472.124 kb on - strand, within GFF2881 at 472.207 kb on + strand, within GFF2881 at 472.208 kb on - strand, within GFF2881 at 472.208 kb on - strand, within GFF2881 at 472.609 kb on + strand, within GFF2881 at 472.610 kb on - strand, within GFF2881 at 472.610 kb on - strand, within GFF2881 at 472.818 kb on - strand at 472.873 kb on + strand at 472.967 kb on - strand, within GFF2882 at 472.967 kb on - strand, within GFF2882 at 472.976 kb on - strand, within GFF2882 at 473.362 kb on + strand, within GFF2882 at 473.437 kb on + strand, within GFF2882 at 473.437 kb on + strand, within GFF2882 at 473.445 kb on + strand, within GFF2882 at 473.446 kb on + strand, within GFF2882 at 473.446 kb on + strand, within GFF2882 at 473.447 kb on - strand, within GFF2882 at 473.447 kb on - strand, within GFF2882 at 473.450 kb on - strand, within GFF2882 at 474.859 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 472,124 - GFF2881 0.24 -0.3 472,124 - GFF2881 0.24 +0.3 472,207 + GFF2881 0.33 -0.3 472,208 - GFF2881 0.33 -0.9 472,208 - GFF2881 0.33 -0.4 472,609 + GFF2881 0.77 -0.3 472,610 - GFF2881 0.77 -0.5 472,610 - GFF2881 0.77 -0.7 472,818 - +2.5 472,873 + +0.3 472,967 - GFF2882 0.10 +0.0 472,967 - GFF2882 0.10 +4.7 472,976 - GFF2882 0.11 -0.3 473,362 + GFF2882 0.43 -1.1 473,437 + GFF2882 0.49 -0.1 473,437 + GFF2882 0.49 +0.7 473,445 + GFF2882 0.50 +0.5 473,446 + GFF2882 0.50 -1.3 473,446 + GFF2882 0.50 -0.2 473,447 - GFF2882 0.50 -0.3 473,447 - GFF2882 0.50 +0.6 473,450 - GFF2882 0.50 -1.1 474,859 - -0.0
Or see this region's nucleotide sequence