Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2656 and GFF2657 are separated by 8 nucleotides GFF2657 and GFF2658 overlap by 1 nucleotides
GFF2656 - Na(+) H(+) antiporter subunit D, at 248,051 to 249,760
GFF2656
GFF2657 - Na(+) H(+) antiporter subunit C, at 249,769 to 250,113
GFF2657
GFF2658 - Na(+) H(+) antiporter subunit A; Na(+) H(+) antiporter subunit B, at 250,113 to 253,061
GFF2658
Position (kb) 249
250
251 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 248.961 kb on + strand, within GFF2656 at 248.961 kb on + strand, within GFF2656 at 248.961 kb on + strand, within GFF2656 at 248.961 kb on + strand, within GFF2656 at 248.962 kb on - strand, within GFF2656 at 248.962 kb on - strand, within GFF2656 at 249.021 kb on + strand, within GFF2656 at 249.022 kb on - strand, within GFF2656 at 249.183 kb on + strand, within GFF2656 at 249.183 kb on + strand, within GFF2656 at 249.183 kb on + strand, within GFF2656 at 249.183 kb on + strand, within GFF2656 at 249.183 kb on + strand, within GFF2656 at 249.183 kb on + strand, within GFF2656 at 249.184 kb on - strand, within GFF2656 at 249.184 kb on - strand, within GFF2656 at 249.184 kb on - strand, within GFF2656 at 249.184 kb on - strand, within GFF2656 at 249.184 kb on - strand, within GFF2656 at 249.184 kb on - strand, within GFF2656 at 249.184 kb on - strand, within GFF2656 at 249.240 kb on + strand, within GFF2656 at 249.240 kb on + strand, within GFF2656 at 249.240 kb on + strand, within GFF2656 at 249.240 kb on + strand, within GFF2656 at 249.240 kb on + strand, within GFF2656 at 249.241 kb on - strand, within GFF2656 at 249.241 kb on - strand, within GFF2656 at 249.241 kb on - strand, within GFF2656 at 249.241 kb on - strand, within GFF2656 at 249.241 kb on - strand, within GFF2656 at 249.241 kb on - strand, within GFF2656 at 249.241 kb on - strand, within GFF2656 at 249.294 kb on + strand, within GFF2656 at 249.543 kb on + strand, within GFF2656 at 249.543 kb on + strand, within GFF2656 at 249.550 kb on - strand, within GFF2656 at 249.911 kb on + strand, within GFF2657 at 249.912 kb on - strand, within GFF2657 at 250.037 kb on + strand, within GFF2657 at 250.037 kb on + strand, within GFF2657 at 250.038 kb on - strand, within GFF2657 at 250.247 kb on - strand at 250.441 kb on + strand, within GFF2658 at 250.441 kb on + strand, within GFF2658 at 250.442 kb on - strand, within GFF2658 at 250.442 kb on - strand, within GFF2658 at 250.522 kb on + strand, within GFF2658 at 250.523 kb on - strand, within GFF2658 at 250.714 kb on + strand, within GFF2658 at 250.714 kb on + strand, within GFF2658 at 250.715 kb on - strand, within GFF2658 at 250.715 kb on - strand, within GFF2658 at 250.883 kb on - strand, within GFF2658 at 250.883 kb on - strand, within GFF2658
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 248,961 + GFF2656 0.53 -0.3 248,961 + GFF2656 0.53 +0.1 248,961 + GFF2656 0.53 -1.0 248,961 + GFF2656 0.53 -0.9 248,962 - GFF2656 0.53 +0.5 248,962 - GFF2656 0.53 +0.3 249,021 + GFF2656 0.57 +0.1 249,022 - GFF2656 0.57 +0.1 249,183 + GFF2656 0.66 -0.0 249,183 + GFF2656 0.66 +0.3 249,183 + GFF2656 0.66 -0.5 249,183 + GFF2656 0.66 +2.9 249,183 + GFF2656 0.66 -0.1 249,183 + GFF2656 0.66 +0.2 249,184 - GFF2656 0.66 -0.1 249,184 - GFF2656 0.66 +0.3 249,184 - GFF2656 0.66 -0.2 249,184 - GFF2656 0.66 +0.4 249,184 - GFF2656 0.66 +0.9 249,184 - GFF2656 0.66 -0.3 249,184 - GFF2656 0.66 -0.9 249,240 + GFF2656 0.70 +0.6 249,240 + GFF2656 0.70 -0.2 249,240 + GFF2656 0.70 -1.1 249,240 + GFF2656 0.70 +0.3 249,240 + GFF2656 0.70 +0.9 249,241 - GFF2656 0.70 -0.1 249,241 - GFF2656 0.70 -0.2 249,241 - GFF2656 0.70 -0.4 249,241 - GFF2656 0.70 -0.1 249,241 - GFF2656 0.70 -0.3 249,241 - GFF2656 0.70 -0.1 249,241 - GFF2656 0.70 -0.4 249,294 + GFF2656 0.73 -1.4 249,543 + GFF2656 0.87 -2.0 249,543 + GFF2656 0.87 +0.1 249,550 - GFF2656 0.88 +0.2 249,911 + GFF2657 0.41 -0.7 249,912 - GFF2657 0.41 -0.8 250,037 + GFF2657 0.78 +1.3 250,037 + GFF2657 0.78 -0.3 250,038 - GFF2657 0.78 -0.8 250,247 - +0.9 250,441 + GFF2658 0.11 -1.4 250,441 + GFF2658 0.11 -1.2 250,442 - GFF2658 0.11 +0.7 250,442 - GFF2658 0.11 +0.5 250,522 + GFF2658 0.14 -0.5 250,523 - GFF2658 0.14 -0.2 250,714 + GFF2658 0.20 -0.2 250,714 + GFF2658 0.20 -0.4 250,715 - GFF2658 0.20 -0.5 250,715 - GFF2658 0.20 +0.5 250,883 - GFF2658 0.26 +1.0 250,883 - GFF2658 0.26 +0.9
Or see this region's nucleotide sequence