Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2474 and GFF2475 overlap by 4 nucleotides GFF2475 and GFF2476 are separated by 32 nucleotides GFF2476 and GFF2477 are separated by 61 nucleotides GFF2477 and GFF2478 overlap by 4 nucleotides
GFF2474 - Hemin transport protein HmuS, at 58,045 to 59,115
GFF2474
GFF2475 - hypothetical protein, at 59,112 to 59,513
GFF2475
GFF2476 - Periplasmic hemin-binding protein, at 59,546 to 60,430
GFF2476
GFF2477 - hypothetical protein, at 60,492 to 60,989
GFF2477
GFF2478 - Hemin ABC transporter, permease protein, at 60,986 to 62,068
GFF2478
Position (kb) 59
60
61 Strain fitness (log2 ratio) -1
0
1
2 at 58.723 kb on + strand, within GFF2474 at 58.723 kb on + strand, within GFF2474 at 58.724 kb on - strand, within GFF2474 at 59.190 kb on + strand, within GFF2475 at 59.190 kb on + strand, within GFF2475 at 59.191 kb on - strand, within GFF2475 at 59.238 kb on + strand, within GFF2475 at 59.239 kb on - strand, within GFF2475 at 59.239 kb on - strand, within GFF2475 at 59.281 kb on - strand, within GFF2475 at 59.691 kb on - strand, within GFF2476 at 59.777 kb on + strand, within GFF2476 at 59.777 kb on + strand, within GFF2476 at 59.778 kb on - strand, within GFF2476 at 59.778 kb on - strand, within GFF2476 at 61.116 kb on - strand, within GFF2478
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 58,723 + GFF2474 0.63 -0.1 58,723 + GFF2474 0.63 -0.3 58,724 - GFF2474 0.63 -0.2 59,190 + GFF2475 0.19 -1.0 59,190 + GFF2475 0.19 -0.0 59,191 - GFF2475 0.20 +0.3 59,238 + GFF2475 0.31 -0.3 59,239 - GFF2475 0.32 +0.6 59,239 - GFF2475 0.32 +0.1 59,281 - GFF2475 0.42 +1.5 59,691 - GFF2476 0.16 +0.5 59,777 + GFF2476 0.26 +0.7 59,777 + GFF2476 0.26 +0.7 59,778 - GFF2476 0.26 +2.3 59,778 - GFF2476 0.26 -0.1 61,116 - GFF2478 0.12 +0.9
Or see this region's nucleotide sequence