Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2394 and GFF2395 are separated by 324 nucleotides GFF2395 and GFF2396 overlap by 4 nucleotides
GFF2394 - Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3), at 37,791 to 39,617
GFF2394
GFF2395 - FOG: GGDEF domain, at 39,942 to 40,445
GFF2395
GFF2396 - hypothetical protein, at 40,442 to 40,852
GFF2396
Position (kb) 37
38
39
40 Strain fitness (log2 ratio) -1
0
1
2 at 36.946 kb on - strand at 36.962 kb on - strand at 37.004 kb on + strand at 37.004 kb on + strand at 37.004 kb on + strand at 37.004 kb on + strand at 37.004 kb on + strand at 37.004 kb on + strand at 37.004 kb on + strand at 37.005 kb on - strand at 37.005 kb on - strand at 37.005 kb on - strand at 37.139 kb on + strand at 37.139 kb on + strand at 37.140 kb on - strand at 37.226 kb on + strand at 37.385 kb on + strand at 37.385 kb on + strand at 37.386 kb on - strand at 37.421 kb on + strand at 37.421 kb on + strand at 37.421 kb on + strand at 37.421 kb on + strand at 37.422 kb on - strand at 37.422 kb on - strand at 37.422 kb on - strand at 37.422 kb on - strand at 37.422 kb on - strand at 37.422 kb on - strand at 37.422 kb on - strand at 37.492 kb on - strand at 37.492 kb on - strand at 37.492 kb on - strand at 37.540 kb on - strand at 37.646 kb on - strand at 37.669 kb on - strand at 37.669 kb on - strand at 37.669 kb on - strand at 37.693 kb on + strand at 37.693 kb on + strand at 37.693 kb on + strand at 37.693 kb on + strand at 37.694 kb on - strand at 37.694 kb on - strand at 37.694 kb on - strand at 37.753 kb on - strand at 37.850 kb on - strand at 37.850 kb on - strand at 37.850 kb on - strand at 37.973 kb on + strand at 37.973 kb on + strand at 37.974 kb on - strand, within GFF2394 at 38.052 kb on - strand, within GFF2394 at 38.105 kb on + strand, within GFF2394 at 38.105 kb on + strand, within GFF2394 at 38.105 kb on + strand, within GFF2394 at 38.105 kb on + strand, within GFF2394 at 38.105 kb on + strand, within GFF2394 at 38.106 kb on - strand, within GFF2394 at 38.106 kb on - strand, within GFF2394 at 38.106 kb on - strand, within GFF2394 at 38.271 kb on + strand, within GFF2394 at 38.271 kb on + strand, within GFF2394 at 38.271 kb on + strand, within GFF2394 at 38.271 kb on + strand, within GFF2394 at 38.271 kb on + strand, within GFF2394 at 38.272 kb on - strand, within GFF2394 at 38.272 kb on - strand, within GFF2394 at 38.272 kb on - strand, within GFF2394 at 38.310 kb on + strand, within GFF2394 at 38.310 kb on + strand, within GFF2394 at 38.310 kb on + strand, within GFF2394 at 38.310 kb on + strand, within GFF2394 at 38.310 kb on + strand, within GFF2394 at 38.310 kb on + strand, within GFF2394 at 38.311 kb on - strand, within GFF2394 at 38.311 kb on - strand, within GFF2394 at 38.322 kb on + strand, within GFF2394 at 38.322 kb on + strand, within GFF2394 at 38.323 kb on - strand, within GFF2394 at 38.388 kb on + strand, within GFF2394 at 38.389 kb on - strand, within GFF2394 at 38.389 kb on - strand, within GFF2394 at 38.389 kb on - strand, within GFF2394 at 38.439 kb on + strand, within GFF2394 at 38.644 kb on - strand, within GFF2394 at 38.672 kb on - strand, within GFF2394 at 38.672 kb on - strand, within GFF2394 at 38.752 kb on - strand, within GFF2394 at 38.796 kb on + strand, within GFF2394 at 38.796 kb on + strand, within GFF2394 at 38.841 kb on + strand, within GFF2394 at 38.842 kb on - strand, within GFF2394 at 38.842 kb on - strand, within GFF2394 at 38.904 kb on + strand, within GFF2394 at 38.905 kb on - strand, within GFF2394 at 38.920 kb on + strand, within GFF2394 at 38.921 kb on - strand, within GFF2394 at 39.126 kb on + strand, within GFF2394 at 39.126 kb on + strand, within GFF2394 at 39.126 kb on + strand, within GFF2394 at 39.126 kb on + strand, within GFF2394 at 39.127 kb on - strand, within GFF2394 at 39.127 kb on - strand, within GFF2394 at 39.127 kb on - strand, within GFF2394 at 39.127 kb on - strand, within GFF2394 at 39.166 kb on + strand, within GFF2394 at 39.166 kb on + strand, within GFF2394 at 39.166 kb on + strand, within GFF2394 at 39.166 kb on + strand, within GFF2394 at 39.167 kb on - strand, within GFF2394 at 39.170 kb on + strand, within GFF2394 at 39.171 kb on - strand, within GFF2394 at 39.236 kb on + strand, within GFF2394 at 39.236 kb on + strand, within GFF2394 at 39.237 kb on - strand, within GFF2394 at 39.267 kb on + strand, within GFF2394 at 39.267 kb on + strand, within GFF2394 at 39.268 kb on - strand, within GFF2394 at 39.284 kb on + strand, within GFF2394 at 39.284 kb on + strand, within GFF2394 at 39.284 kb on + strand, within GFF2394 at 39.284 kb on + strand, within GFF2394 at 39.284 kb on + strand, within GFF2394 at 39.285 kb on - strand, within GFF2394 at 39.285 kb on - strand, within GFF2394 at 39.285 kb on - strand, within GFF2394 at 39.311 kb on - strand, within GFF2394 at 39.389 kb on + strand, within GFF2394 at 39.390 kb on - strand, within GFF2394 at 39.390 kb on - strand, within GFF2394 at 39.390 kb on - strand, within GFF2394 at 39.459 kb on + strand at 39.621 kb on + strand at 39.621 kb on + strand at 39.622 kb on - strand at 39.635 kb on - strand at 39.720 kb on + strand at 39.721 kb on - strand at 39.822 kb on + strand at 39.864 kb on + strand at 39.915 kb on - strand at 40.270 kb on - strand, within GFF2395 at 40.270 kb on - strand, within GFF2395 at 40.270 kb on - strand, within GFF2395 at 40.530 kb on + strand, within GFF2396 at 40.530 kb on + strand, within GFF2396 at 40.530 kb on + strand, within GFF2396 at 40.530 kb on + strand, within GFF2396 at 40.531 kb on - strand, within GFF2396 at 40.531 kb on - strand, within GFF2396
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 36,946 - +2.3 36,962 - -0.2 37,004 + +0.3 37,004 + -0.3 37,004 + -0.7 37,004 + +0.7 37,004 + +0.3 37,004 + +0.8 37,004 + -0.5 37,005 - +0.4 37,005 - +0.7 37,005 - +0.0 37,139 + -0.8 37,139 + +0.5 37,140 - +1.1 37,226 + -1.2 37,385 + +0.3 37,385 + -0.7 37,386 - +1.3 37,421 + -1.2 37,421 + -0.4 37,421 + -0.1 37,421 + -0.2 37,422 - -0.1 37,422 - +0.2 37,422 - +0.2 37,422 - -0.2 37,422 - +1.0 37,422 - +1.3 37,422 - -0.3 37,492 - -0.5 37,492 - +0.3 37,492 - +0.1 37,540 - +0.2 37,646 - +0.6 37,669 - -0.1 37,669 - -0.1 37,669 - -0.7 37,693 + -0.3 37,693 + -1.1 37,693 + +0.6 37,693 + -0.3 37,694 - -0.4 37,694 - +0.3 37,694 - -0.1 37,753 - -0.3 37,850 - -0.8 37,850 - -0.1 37,850 - -0.2 37,973 + +0.5 37,973 + -0.5 37,974 - GFF2394 0.10 +0.5 38,052 - GFF2394 0.14 -0.7 38,105 + GFF2394 0.17 +0.5 38,105 + GFF2394 0.17 -0.3 38,105 + GFF2394 0.17 -1.6 38,105 + GFF2394 0.17 +0.4 38,105 + GFF2394 0.17 -0.2 38,106 - GFF2394 0.17 +0.1 38,106 - GFF2394 0.17 -0.4 38,106 - GFF2394 0.17 +0.6 38,271 + GFF2394 0.26 +0.1 38,271 + GFF2394 0.26 +0.8 38,271 + GFF2394 0.26 -0.6 38,271 + GFF2394 0.26 +0.1 38,271 + GFF2394 0.26 +0.2 38,272 - GFF2394 0.26 -0.9 38,272 - GFF2394 0.26 +0.2 38,272 - GFF2394 0.26 -0.5 38,310 + GFF2394 0.28 -0.7 38,310 + GFF2394 0.28 -0.0 38,310 + GFF2394 0.28 -0.5 38,310 + GFF2394 0.28 -0.5 38,310 + GFF2394 0.28 +0.0 38,310 + GFF2394 0.28 -0.1 38,311 - GFF2394 0.28 +0.5 38,311 - GFF2394 0.28 -1.0 38,322 + GFF2394 0.29 +0.1 38,322 + GFF2394 0.29 -0.5 38,323 - GFF2394 0.29 -0.3 38,388 + GFF2394 0.33 -0.2 38,389 - GFF2394 0.33 +0.3 38,389 - GFF2394 0.33 -0.5 38,389 - GFF2394 0.33 +0.6 38,439 + GFF2394 0.35 -0.2 38,644 - GFF2394 0.47 +0.1 38,672 - GFF2394 0.48 -0.3 38,672 - GFF2394 0.48 +0.4 38,752 - GFF2394 0.53 -1.1 38,796 + GFF2394 0.55 +1.3 38,796 + GFF2394 0.55 -0.1 38,841 + GFF2394 0.57 -0.9 38,842 - GFF2394 0.58 -0.5 38,842 - GFF2394 0.58 +0.2 38,904 + GFF2394 0.61 -0.5 38,905 - GFF2394 0.61 -0.1 38,920 + GFF2394 0.62 -0.8 38,921 - GFF2394 0.62 +0.0 39,126 + GFF2394 0.73 +0.0 39,126 + GFF2394 0.73 -1.7 39,126 + GFF2394 0.73 +1.3 39,126 + GFF2394 0.73 -0.2 39,127 - GFF2394 0.73 -0.5 39,127 - GFF2394 0.73 +1.3 39,127 - GFF2394 0.73 +0.1 39,127 - GFF2394 0.73 -0.3 39,166 + GFF2394 0.75 +0.7 39,166 + GFF2394 0.75 -0.2 39,166 + GFF2394 0.75 +1.3 39,166 + GFF2394 0.75 -0.1 39,167 - GFF2394 0.75 +0.3 39,170 + GFF2394 0.75 +0.1 39,171 - GFF2394 0.76 -1.2 39,236 + GFF2394 0.79 -0.3 39,236 + GFF2394 0.79 +0.9 39,237 - GFF2394 0.79 +0.5 39,267 + GFF2394 0.81 -1.0 39,267 + GFF2394 0.81 -0.1 39,268 - GFF2394 0.81 -0.9 39,284 + GFF2394 0.82 +0.3 39,284 + GFF2394 0.82 -0.7 39,284 + GFF2394 0.82 +0.6 39,284 + GFF2394 0.82 -0.3 39,284 + GFF2394 0.82 +1.0 39,285 - GFF2394 0.82 -0.5 39,285 - GFF2394 0.82 +0.1 39,285 - GFF2394 0.82 +0.8 39,311 - GFF2394 0.83 +0.7 39,389 + GFF2394 0.87 +1.1 39,390 - GFF2394 0.88 +0.4 39,390 - GFF2394 0.88 -0.2 39,390 - GFF2394 0.88 +0.1 39,459 + -0.2 39,621 + +0.3 39,621 + +1.1 39,622 - -0.0 39,635 - -0.1 39,720 + -0.3 39,721 - +0.8 39,822 + -0.3 39,864 + +0.8 39,915 - +0.8 40,270 - GFF2395 0.65 +0.7 40,270 - GFF2395 0.65 +0.1 40,270 - GFF2395 0.65 -0.4 40,530 + GFF2396 0.21 -0.7 40,530 + GFF2396 0.21 -0.6 40,530 + GFF2396 0.21 -0.7 40,530 + GFF2396 0.21 -0.3 40,531 - GFF2396 0.22 -0.5 40,531 - GFF2396 0.22 +0.5
Or see this region's nucleotide sequence