Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2321

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
1,204,524	+		GFF2320	0.35	-0.1
1,204,525	-		GFF2320	0.35	-0.1
1,204,558	+		GFF2320	0.38	-0.1
1,204,559	-		GFF2320	0.38	-0.7
1,204,654	+		GFF2320	0.47	-0.3
1,204,655	-		GFF2320	0.47	-0.2
1,204,837	+		GFF2320	0.64	+0.7
1,204,838	-		GFF2320	0.64	+0.1
1,205,278	+				-0.5
1,205,279	-				+0.2
1,205,279	-				-0.0
1,205,279	-				-0.0
1,205,320	+				-0.3
1,205,320	+				+1.1
1,205,320	+				-0.2
1,205,320	+				-1.0
1,205,320	+				-0.2
1,205,320	+				+0.9
1,205,320	+				-0.3
1,205,320	+				-0.2
1,205,320	+				+0.2
1,205,320	+				-2.4
1,205,320	+				-0.9
1,205,321	-				-0.3
1,205,321	-				+1.4
1,205,321	-				+1.3
1,205,321	-				+0.6
1,205,321	-				-0.0
1,205,321	-				-1.2
1,205,321	-				-0.5
1,205,321	-				+1.1
1,205,509	+				-0.2
1,205,510	-				-0.3
1,205,530	+				-0.5
1,205,531	-				-1.0
1,205,556	-				+0.2
1,205,556	-				-0.9
1,205,556	-				+1.3
1,205,556	-				+0.8
1,205,723	-		GFF2321	0.11	+1.3
1,205,734	-		GFF2321	0.11	+0.5
1,205,741	+		GFF2321	0.12	+0.0
1,205,741	+		GFF2321	0.12	+0.4
1,205,774	+		GFF2321	0.13	+0.7
1,205,775	-		GFF2321	0.13	+0.5
1,205,930	+		GFF2321	0.21	-0.2
1,205,930	+		GFF2321	0.21	+1.2
1,205,930	+		GFF2321	0.21	-0.8
1,205,930	+		GFF2321	0.21	-0.9
1,205,930	+		GFF2321	0.21	-0.1
1,205,930	+		GFF2321	0.21	+0.0
1,205,930	+		GFF2321	0.21	-0.2
1,205,930	+		GFF2321	0.21	+0.1
1,205,930	+		GFF2321	0.21	+0.9
1,205,930	+		GFF2321	0.21	+0.1
1,205,930	+		GFF2321	0.21	-0.3
1,205,930	+		GFF2321	0.21	+0.4
1,205,930	+		GFF2321	0.21	+0.1
1,205,930	+		GFF2321	0.21	+0.5
1,205,930	+		GFF2321	0.21	-0.3
1,205,930	+		GFF2321	0.21	+0.3
1,205,930	+		GFF2321	0.21	+1.6
1,205,930	+		GFF2321	0.21	+0.7
1,205,930	+		GFF2321	0.21	-0.2
1,205,930	+		GFF2321	0.21	-0.7
1,205,931	-		GFF2321	0.22	-0.1
1,205,931	-		GFF2321	0.22	-0.8
1,205,931	-		GFF2321	0.22	+0.8
1,205,931	-		GFF2321	0.22	-0.1
1,205,931	-		GFF2321	0.22	+0.1
1,205,931	-		GFF2321	0.22	-0.2
1,205,931	-		GFF2321	0.22	-0.1
1,205,931	-		GFF2321	0.22	+0.2
1,206,101	+		GFF2321	0.30	-1.0
1,206,101	+		GFF2321	0.30	-0.6
1,206,101	+		GFF2321	0.30	-0.3
1,206,101	+		GFF2321	0.30	+1.3
1,206,101	+		GFF2321	0.30	-0.5
1,206,101	+		GFF2321	0.30	-0.1
1,206,101	+		GFF2321	0.30	+0.6
1,206,101	+		GFF2321	0.30	+0.0
1,206,102	-		GFF2321	0.30	-0.5
1,206,102	-		GFF2321	0.30	-0.6
1,206,104	-		GFF2321	0.30	+0.0
1,206,221	+		GFF2321	0.36	+0.3
1,206,221	+		GFF2321	0.36	-0.2
1,206,221	+		GFF2321	0.36	+0.4
1,206,221	+		GFF2321	0.36	+1.4
1,206,221	+		GFF2321	0.36	-1.0
1,206,221	+		GFF2321	0.36	+1.0
1,206,221	+		GFF2321	0.36	+0.1
1,206,222	-		GFF2321	0.37	-0.7
1,206,222	-		GFF2321	0.37	+0.3
1,206,222	-		GFF2321	0.37	-0.2
1,206,242	+		GFF2321	0.38	+0.7
1,206,242	+		GFF2321	0.38	+0.2
1,206,242	+		GFF2321	0.38	-1.5
1,206,242	+		GFF2321	0.38	-0.3
1,206,242	+		GFF2321	0.38	+0.4
1,206,242	+		GFF2321	0.38	+0.3
1,206,243	-		GFF2321	0.38	+0.1
1,206,243	-		GFF2321	0.38	+0.1
1,206,243	-		GFF2321	0.38	+0.2
1,206,243	-		GFF2321	0.38	-0.1
1,206,243	-		GFF2321	0.38	-1.4
1,206,243	-		GFF2321	0.38	+0.3
1,206,290	+		GFF2321	0.40	+0.1
1,206,290	+		GFF2321	0.40	+0.1
1,206,290	+		GFF2321	0.40	+0.3
1,206,290	+		GFF2321	0.40	+1.5
1,206,290	+		GFF2321	0.40	+0.8
1,206,290	+		GFF2321	0.40	-0.3
1,206,291	-		GFF2321	0.40	-0.3
1,206,291	-		GFF2321	0.40	+0.3
1,206,291	-		GFF2321	0.40	+0.2
1,206,291	-		GFF2321	0.40	+0.9
1,206,291	-		GFF2321	0.40	-0.0
1,206,291	-		GFF2321	0.40	-0.0
1,206,392	+		GFF2321	0.45	+1.0
1,206,392	+		GFF2321	0.45	-0.1
1,206,392	+		GFF2321	0.45	+0.4
1,206,392	+		GFF2321	0.45	-0.8
1,206,393	-		GFF2321	0.45	-0.0
1,206,393	-		GFF2321	0.45	+1.0
1,206,393	-		GFF2321	0.45	+0.5
1,206,393	-		GFF2321	0.45	-0.5
1,206,393	-		GFF2321	0.45	+0.0
1,206,393	-		GFF2321	0.45	+1.5
1,206,393	-		GFF2321	0.45	-0.5
1,206,393	-		GFF2321	0.45	-0.1
1,206,393	-		GFF2321	0.45	-0.2
1,206,422	+		GFF2321	0.47	-0.3
1,206,422	+		GFF2321	0.47	-0.3
1,206,557	+		GFF2321	0.54	-0.4
1,206,557	+		GFF2321	0.54	+0.3
1,206,557	+		GFF2321	0.54	+0.1
1,206,557	+		GFF2321	0.54	+0.1
1,206,557	+		GFF2321	0.54	-0.3
1,206,557	+		GFF2321	0.54	-0.1
1,206,557	+		GFF2321	0.54	+1.0
1,206,557	+		GFF2321	0.54	+0.6
1,206,557	+		GFF2321	0.54	+0.4
1,206,557	+		GFF2321	0.54	+0.4
1,206,557	+		GFF2321	0.54	+0.0
1,206,557	+		GFF2321	0.54	+0.2
1,206,557	+		GFF2321	0.54	-0.3
1,206,558	-		GFF2321	0.54	-0.2
1,206,558	-		GFF2321	0.54	-0.0
1,206,558	-		GFF2321	0.54	+1.3
1,206,558	-		GFF2321	0.54	+1.0
1,206,558	-		GFF2321	0.54	-0.2
1,206,558	-		GFF2321	0.54	-1.4
1,206,558	-		GFF2321	0.54	-0.0
1,206,558	-		GFF2321	0.54	+0.9
1,206,558	-		GFF2321	0.54	-0.4
1,206,558	-		GFF2321	0.54	+0.9
1,206,558	-		GFF2321	0.54	+0.2
1,206,558	-		GFF2321	0.54	+0.1
1,206,558	-		GFF2321	0.54	-0.2
1,206,592	+		GFF2321	0.56	-0.7
1,206,592	+		GFF2321	0.56	+0.1
1,206,633	-		GFF2321	0.58	+1.3
1,206,779	+		GFF2321	0.65	-0.4
1,206,780	-		GFF2321	0.65	+0.2
1,206,780	-		GFF2321	0.65	-0.8
1,206,780	-		GFF2321	0.65	-0.3
1,206,825	-		GFF2321	0.68	+0.6
1,206,825	-		GFF2321	0.68	-0.2
1,206,825	-		GFF2321	0.68	-0.8
1,206,825	-		GFF2321	0.68	+0.1
1,206,825	-		GFF2321	0.68	-0.4
1,206,825	-		GFF2321	0.68	-0.2
1,206,825	-		GFF2321	0.68	-0.9
1,206,929	+		GFF2321	0.73	-0.1
1,206,977	+		GFF2321	0.75	-0.4
1,206,977	+		GFF2321	0.75	+0.2
1,206,977	+		GFF2321	0.75	+0.2
1,206,978	-		GFF2321	0.75	+0.1
1,206,978	-		GFF2321	0.75	+0.1
1,206,978	-		GFF2321	0.75	+1.6
1,206,978	-		GFF2321	0.75	-0.2
1,206,978	-		GFF2321	0.75	-0.6
1,207,385	+				+0.7
1,207,385	-				-0.7
1,207,386	-				-0.2
1,207,386	-				-0.2
1,207,386	-				-0.2
1,207,407	-				+0.3
1,207,707	+		GFF2322	0.23	+0.7
1,207,707	+		GFF2322	0.23	+0.1
1,207,707	+		GFF2322	0.23	-0.6
1,207,707	+		GFF2322	0.23	-0.8
1,207,707	+		GFF2322	0.23	-0.9
1,207,708	-		GFF2322	0.23	+0.1
1,207,708	-		GFF2322	0.23	-0.0
1,207,708	-		GFF2322	0.23	-0.1
1,207,713	+		GFF2322	0.23	+0.2
1,207,713	+		GFF2322	0.23	-0.4
1,207,713	+		GFF2322	0.23	-0.6
1,207,714	-		GFF2322	0.24	+0.4
1,208,013	+		GFF2322	0.52	+0.7
1,208,013	+		GFF2322	0.52	+1.3
1,208,013	+		GFF2322	0.52	-0.7
1,208,014	-		GFF2322	0.52	-0.0
1,208,014	-		GFF2322	0.52	+1.0
1,208,058	+		GFF2322	0.57	-1.3
1,208,097	+		GFF2322	0.60	+0.7
1,208,097	+		GFF2322	0.60	+0.1
1,208,128	-		GFF2322	0.63	-0.8
1,208,128	-		GFF2322	0.63	-0.3
1,208,128	-		GFF2322	0.63	-0.8
1,208,296	-		GFF2322	0.79	+0.1