Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2305

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
1,187,548	+		GFF2302	0.87	-0.0
1,187,549	-		GFF2302	0.87	+0.4
1,187,814	+		GFF2303	0.65	+0.7
1,187,814	+		GFF2303	0.65	+0.8
1,187,814	+		GFF2303	0.65	+0.6
1,187,814	+		GFF2303	0.65	-0.3
1,187,814	+		GFF2303	0.65	-1.1
1,187,814	+		GFF2303	0.65	-1.9
1,187,814	+		GFF2303	0.65	-0.2
1,187,814	+		GFF2303	0.65	-0.0
1,187,815	-		GFF2303	0.66	+0.1
1,187,815	-		GFF2303	0.66	-0.2
1,187,815	-		GFF2303	0.66	-0.6
1,187,815	-		GFF2303	0.66	+0.3
1,187,815	-		GFF2303	0.66	-0.4
1,187,815	-		GFF2303	0.66	+0.5
1,187,815	-		GFF2303	0.66	+0.1
1,188,316	-		GFF2304	0.75	+0.5
1,188,316	-		GFF2304	0.75	-0.1
1,188,316	-		GFF2304	0.75	+1.3
1,188,316	-		GFF2304	0.75	-0.0
1,188,319	+		GFF2304	0.76	+0.3
1,188,319	+		GFF2304	0.76	+2.9
1,188,319	+		GFF2304	0.76	+0.2
1,188,320	-		GFF2304	0.76	-0.0
1,188,320	-		GFF2304	0.76	+0.2
1,188,454	+				-0.0
1,188,550	+				+0.7
1,188,550	+				+0.4
1,188,550	+				-1.0
1,188,550	+				+1.3
1,188,550	+				+0.4
1,188,551	-				-2.2
1,188,551	-				-0.2
1,188,551	-				-0.8
1,188,551	-				+1.9
1,188,551	-				+1.3
1,188,637	+		GFF2305	0.11	-0.1
1,188,637	+		GFF2305	0.11	+0.0
1,188,638	-		GFF2305	0.12	+0.5
1,188,638	-		GFF2305	0.12	-0.2
1,188,898	+		GFF2305	0.30	-0.4
1,188,898	+		GFF2305	0.30	-0.7
1,188,899	-		GFF2305	0.30	+0.1
1,189,181	-		GFF2305	0.51	-1.2
1,189,723	+		GFF2305	0.90	+0.1
1,189,723	+		GFF2305	0.90	-0.7
1,189,723	+		GFF2305	0.90	-0.3
1,189,723	+		GFF2305	0.90	-0.3
1,189,724	-		GFF2305	0.90	-0.3
1,189,724	-		GFF2305	0.90	+1.0
1,189,807	+				-0.6
1,189,807	+				+0.2
1,189,808	-				-0.3
1,189,902	+				-1.7
1,189,902	+				-0.4
1,189,902	+				-0.1
1,189,903	-				+1.3
1,189,903	-				+0.5
1,189,927	+				-1.5
1,189,928	-				+0.3
1,189,928	-				+0.7
1,189,928	-				-0.3
1,190,238	-		GFF2306	0.47	-0.7
1,190,279	+		GFF2306	0.53	-0.1
1,190,513	+				-0.0
1,190,699	-		GFF2307	0.18	+0.1