Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2290

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
1,175,205	+				+0.1
1,175,206	-				+0.5
1,175,206	-				-0.6
1,175,322	+		GFF2289	0.22	+1.0
1,175,322	+		GFF2289	0.22	+0.8
1,175,331	+		GFF2289	0.23	+0.2
1,175,583	+		GFF2289	0.50	-0.7
1,175,877	+		GFF2289	0.81	+1.3
1,175,877	+		GFF2289	0.81	+1.8
1,175,878	-		GFF2289	0.81	+0.2
1,175,878	-		GFF2289	0.81	+0.2
1,175,878	-		GFF2289	0.81	+0.5
1,175,887	-		GFF2289	0.82	+0.6
1,175,919	+		GFF2289	0.86	+0.5
1,176,245	+		GFF2290	0.23	+0.3
1,176,245	+		GFF2290	0.23	-0.3
1,176,245	+		GFF2290	0.23	-0.7
1,176,296	+		GFF2290	0.29	-1.0
1,176,296	+		GFF2290	0.29	+0.2
1,176,296	+		GFF2290	0.29	+0.4
1,176,297	-		GFF2290	0.29	+0.3
1,176,297	-		GFF2290	0.29	-1.5
1,176,297	-		GFF2290	0.29	-0.4
1,176,426	-		GFF2290	0.44	-0.4
1,176,467	+		GFF2290	0.49	-0.4
1,176,467	+		GFF2290	0.49	+0.3
1,176,467	+		GFF2290	0.49	+0.4
1,176,506	+		GFF2290	0.53	-0.7
1,176,507	-		GFF2290	0.54	+1.9
1,177,070	+				+0.4
1,177,070	+				-0.3
1,177,071	-				-0.1
1,177,071	-				+1.3
1,177,071	-				-1.3
1,177,071	-				-0.1
1,177,179	-		GFF2291	0.16	-0.4
1,177,215	-		GFF2291	0.20	+0.1
1,177,271	+		GFF2291	0.26	-0.7
1,177,271	+		GFF2291	0.26	+0.2
1,177,271	+		GFF2291	0.26	+0.3
1,177,271	+		GFF2291	0.26	-0.4
1,177,272	-		GFF2291	0.26	-0.5
1,177,272	-		GFF2291	0.26	+0.1
1,177,436	+		GFF2291	0.43	+0.4
1,177,436	+		GFF2291	0.43	-0.7
1,177,436	+		GFF2291	0.43	-1.1
1,177,436	+		GFF2291	0.43	-0.0
1,177,436	+		GFF2291	0.43	+0.9
1,177,437	-		GFF2291	0.43	+0.9
1,177,437	-		GFF2291	0.43	-0.2
1,177,437	-		GFF2291	0.43	-0.2
1,177,676	+		GFF2291	0.67	+0.9
1,177,677	-		GFF2291	0.67	+0.1
1,177,736	+		GFF2291	0.73	-0.6