Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2254

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
1,137,176	+		GFF2253	0.23	-0.3
1,137,332	+		GFF2253	0.42	+0.1
1,137,332	+		GFF2253	0.42	-0.1
1,137,953	+		GFF2254	0.12	-0.3
1,137,954	-		GFF2254	0.12	-0.3
1,137,956	+		GFF2254	0.13	+0.1
1,137,956	+		GFF2254	0.13	-0.0
1,138,274	+		GFF2254	0.43	-0.1
1,138,442	+		GFF2254	0.58	-1.2
1,138,442	+		GFF2254	0.58	+0.3
1,138,939	+				+0.2
1,138,939	+				-0.5
1,138,939	+				-1.0
1,138,940	-				-0.5
1,139,018	-		GFF2255	0.17	+1.0
1,139,036	-		GFF2255	0.19	+1.0
1,139,266	+		GFF2255	0.48	-0.7
1,139,440	+		GFF2255	0.70	+0.3
1,139,440	+		GFF2255	0.70	-0.2
1,139,440	+		GFF2255	0.70	+0.4
1,139,440	+		GFF2255	0.70	-1.0
1,139,441	-		GFF2255	0.70	-0.7
1,139,441	-		GFF2255	0.70	+0.9
1,139,441	-		GFF2255	0.70	-0.3
1,139,618	-				-0.9