Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF20 and GFF21 are separated by 457 nucleotides GFF21 and GFF22 are separated by 47 nucleotides GFF22 and GFF23 are separated by 12 nucleotides
GFF20 - Membrane carboxypeptidase (penicillin-binding protein), at 15,722 to 18,784
GFF20
GFF21 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 19,242 to 20,258
GFF21
GFF22 - Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB, at 20,306 to 21,064
GFF22
GFF23 - ABC transporter permease protein with unknown substrate, at 21,077 to 21,865
GFF23
Position (kb) 19
20
21 Strain fitness (log2 ratio) -1
0
1 at 18.369 kb on + strand, within GFF20 at 18.487 kb on - strand at 18.850 kb on - strand at 19.035 kb on - strand at 19.094 kb on - strand at 19.155 kb on - strand at 19.441 kb on - strand, within GFF21 at 19.441 kb on - strand, within GFF21 at 19.461 kb on + strand, within GFF21 at 19.461 kb on + strand, within GFF21 at 19.461 kb on + strand, within GFF21 at 19.461 kb on + strand, within GFF21 at 19.461 kb on + strand, within GFF21 at 19.461 kb on + strand, within GFF21 at 19.461 kb on + strand, within GFF21 at 19.462 kb on - strand, within GFF21 at 19.462 kb on - strand, within GFF21 at 19.462 kb on - strand, within GFF21 at 19.704 kb on + strand, within GFF21 at 19.704 kb on + strand, within GFF21 at 19.704 kb on + strand, within GFF21 at 19.704 kb on + strand, within GFF21 at 19.705 kb on - strand, within GFF21 at 19.729 kb on - strand, within GFF21 at 19.782 kb on + strand, within GFF21 at 19.782 kb on + strand, within GFF21 at 19.782 kb on + strand, within GFF21 at 19.783 kb on - strand, within GFF21 at 19.783 kb on - strand, within GFF21 at 19.783 kb on - strand, within GFF21 at 19.990 kb on - strand, within GFF21 at 20.010 kb on + strand, within GFF21 at 20.055 kb on + strand, within GFF21 at 21.192 kb on - strand, within GFF23 at 21.234 kb on - strand, within GFF23 at 21.234 kb on - strand, within GFF23
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 18,369 + GFF20 0.86 -0.2 18,487 - -0.4 18,850 - -0.2 19,035 - -0.2 19,094 - +0.3 19,155 - +1.3 19,441 - GFF21 0.20 -0.7 19,441 - GFF21 0.20 +1.3 19,461 + GFF21 0.22 +0.5 19,461 + GFF21 0.22 +0.3 19,461 + GFF21 0.22 +1.3 19,461 + GFF21 0.22 -0.4 19,461 + GFF21 0.22 +0.7 19,461 + GFF21 0.22 -0.0 19,461 + GFF21 0.22 -0.0 19,462 - GFF21 0.22 +0.3 19,462 - GFF21 0.22 +0.2 19,462 - GFF21 0.22 +0.0 19,704 + GFF21 0.45 -0.3 19,704 + GFF21 0.45 +1.1 19,704 + GFF21 0.45 +0.3 19,704 + GFF21 0.45 -0.1 19,705 - GFF21 0.46 +0.5 19,729 - GFF21 0.48 -0.4 19,782 + GFF21 0.53 +0.5 19,782 + GFF21 0.53 +0.3 19,782 + GFF21 0.53 +0.0 19,783 - GFF21 0.53 +0.3 19,783 - GFF21 0.53 +1.3 19,783 - GFF21 0.53 +0.3 19,990 - GFF21 0.74 +1.0 20,010 + GFF21 0.76 -1.3 20,055 + GFF21 0.80 +0.3 21,192 - GFF23 0.15 +1.4 21,234 - GFF23 0.20 -0.3 21,234 - GFF23 0.20 +0.7
Or see this region's nucleotide sequence