Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2047 and GFF2048 are separated by 86 nucleotides GFF2048 and GFF2049 are separated by 7 nucleotides
GFF2047 - hypothetical protein, at 927,881 to 930,343
GFF2047
GFF2048 - Glutathione S-transferase (EC 2.5.1.18), at 930,430 to 931,035
GFF2048
GFF2049 - Permeases of the major facilitator superfamily, at 931,043 to 932,263
GFF2049
Position (kb) 930
931
932 Strain fitness (log2 ratio) -1
0
1
2 at 930.341 kb on + strand at 930.374 kb on + strand at 930.439 kb on + strand at 930.440 kb on - strand at 930.440 kb on - strand at 930.440 kb on - strand at 930.442 kb on + strand at 930.556 kb on + strand, within GFF2048 at 930.559 kb on + strand, within GFF2048 at 930.559 kb on + strand, within GFF2048 at 930.559 kb on + strand, within GFF2048 at 930.559 kb on + strand, within GFF2048 at 930.580 kb on + strand, within GFF2048 at 930.580 kb on + strand, within GFF2048 at 930.580 kb on + strand, within GFF2048 at 930.581 kb on - strand, within GFF2048 at 930.643 kb on + strand, within GFF2048 at 930.643 kb on + strand, within GFF2048 at 930.643 kb on + strand, within GFF2048 at 930.643 kb on + strand, within GFF2048 at 930.643 kb on + strand, within GFF2048 at 930.644 kb on - strand, within GFF2048 at 930.862 kb on + strand, within GFF2048 at 930.862 kb on + strand, within GFF2048 at 930.862 kb on + strand, within GFF2048 at 930.863 kb on - strand, within GFF2048 at 930.899 kb on - strand, within GFF2048 at 931.033 kb on + strand at 931.033 kb on + strand at 931.034 kb on - strand at 931.458 kb on + strand, within GFF2049 at 931.459 kb on - strand, within GFF2049 at 931.469 kb on - strand, within GFF2049 at 931.469 kb on - strand, within GFF2049 at 931.469 kb on - strand, within GFF2049 at 931.469 kb on - strand, within GFF2049 at 931.469 kb on - strand, within GFF2049 at 931.469 kb on - strand, within GFF2049 at 931.469 kb on - strand, within GFF2049 at 931.524 kb on + strand, within GFF2049 at 931.524 kb on + strand, within GFF2049 at 931.525 kb on - strand, within GFF2049 at 931.533 kb on + strand, within GFF2049 at 931.534 kb on - strand, within GFF2049 at 931.534 kb on - strand, within GFF2049 at 931.534 kb on - strand, within GFF2049 at 931.804 kb on - strand, within GFF2049 at 931.804 kb on - strand, within GFF2049 at 931.806 kb on + strand, within GFF2049 at 931.806 kb on + strand, within GFF2049 at 931.806 kb on + strand, within GFF2049 at 931.807 kb on - strand, within GFF2049 at 931.807 kb on - strand, within GFF2049 at 931.807 kb on - strand, within GFF2049
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 930,341 + +0.1 930,374 + +0.7 930,439 + -0.6 930,440 - +0.3 930,440 - -0.2 930,440 - +0.1 930,442 + +0.2 930,556 + GFF2048 0.21 -0.3 930,559 + GFF2048 0.21 -0.3 930,559 + GFF2048 0.21 -0.8 930,559 + GFF2048 0.21 -0.1 930,559 + GFF2048 0.21 -0.2 930,580 + GFF2048 0.25 -0.6 930,580 + GFF2048 0.25 +0.3 930,580 + GFF2048 0.25 +0.8 930,581 - GFF2048 0.25 +1.5 930,643 + GFF2048 0.35 -0.4 930,643 + GFF2048 0.35 -0.7 930,643 + GFF2048 0.35 +0.8 930,643 + GFF2048 0.35 +0.1 930,643 + GFF2048 0.35 -0.1 930,644 - GFF2048 0.35 -1.1 930,862 + GFF2048 0.71 -0.5 930,862 + GFF2048 0.71 +0.7 930,862 + GFF2048 0.71 -0.2 930,863 - GFF2048 0.71 +0.5 930,899 - GFF2048 0.77 -0.3 931,033 + -0.2 931,033 + +0.1 931,034 - +0.4 931,458 + GFF2049 0.34 -0.5 931,459 - GFF2049 0.34 -1.1 931,469 - GFF2049 0.35 +0.7 931,469 - GFF2049 0.35 -0.4 931,469 - GFF2049 0.35 +2.3 931,469 - GFF2049 0.35 +0.1 931,469 - GFF2049 0.35 +0.3 931,469 - GFF2049 0.35 -0.9 931,469 - GFF2049 0.35 -0.6 931,524 + GFF2049 0.39 +1.1 931,524 + GFF2049 0.39 +0.4 931,525 - GFF2049 0.39 -0.1 931,533 + GFF2049 0.40 -0.3 931,534 - GFF2049 0.40 +0.1 931,534 - GFF2049 0.40 -0.9 931,534 - GFF2049 0.40 -0.2 931,804 - GFF2049 0.62 -0.3 931,804 - GFF2049 0.62 -0.3 931,806 + GFF2049 0.62 -0.3 931,806 + GFF2049 0.62 +0.1 931,806 + GFF2049 0.62 +0.4 931,807 - GFF2049 0.63 -0.5 931,807 - GFF2049 0.63 -0.4 931,807 - GFF2049 0.63 +0.5
Or see this region's nucleotide sequence