Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF193 and GFF194 are separated by 40 nucleotides GFF194 and GFF195 overlap by 4 nucleotides GFF195 and GFF196 overlap by 4 nucleotides
GFF193 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 206,772 to 207,698
GFF193
GFF194 - FIG003003: hypothetical protein, at 207,739 to 208,551
GFF194
GFF195 - Oxidoreductase, Gfo/Idh/MocA family, at 208,548 to 209,675
GFF195
GFF196 - Inosose isomerase (EC 5.3.99.-), at 209,672 to 210,739
GFF196
Position (kb) 208
209
210 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 207.799 kb on + strand at 207.799 kb on + strand at 207.799 kb on + strand at 207.800 kb on - strand at 207.901 kb on + strand, within GFF194 at 207.901 kb on + strand, within GFF194 at 207.901 kb on + strand, within GFF194 at 207.904 kb on + strand, within GFF194 at 207.905 kb on - strand, within GFF194 at 208.486 kb on + strand at 208.487 kb on - strand at 208.708 kb on + strand, within GFF195 at 208.709 kb on - strand, within GFF195 at 208.855 kb on + strand, within GFF195 at 209.044 kb on + strand, within GFF195 at 209.248 kb on + strand, within GFF195 at 209.248 kb on + strand, within GFF195 at 209.869 kb on - strand, within GFF196 at 209.968 kb on - strand, within GFF196 at 210.036 kb on + strand, within GFF196 at 210.187 kb on - strand, within GFF196 at 210.298 kb on - strand, within GFF196 at 210.304 kb on - strand, within GFF196 at 210.561 kb on + strand, within GFF196 at 210.562 kb on - strand, within GFF196
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 207,799 + +0.2 207,799 + +0.3 207,799 + +0.2 207,800 - +0.2 207,901 + GFF194 0.20 -0.1 207,901 + GFF194 0.20 -0.0 207,901 + GFF194 0.20 +0.3 207,904 + GFF194 0.20 +5.5 207,905 - GFF194 0.20 +0.7 208,486 + -0.1 208,487 - +1.1 208,708 + GFF195 0.14 +0.5 208,709 - GFF195 0.14 -0.8 208,855 + GFF195 0.27 -0.3 209,044 + GFF195 0.44 -0.6 209,248 + GFF195 0.62 -0.7 209,248 + GFF195 0.62 +0.3 209,869 - GFF196 0.18 +2.1 209,968 - GFF196 0.28 +0.9 210,036 + GFF196 0.34 -0.1 210,187 - GFF196 0.48 +0.2 210,298 - GFF196 0.59 +0.1 210,304 - GFF196 0.59 +0.8 210,561 + GFF196 0.83 +0.9 210,562 - GFF196 0.83 +0.3
Or see this region's nucleotide sequence