Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1811 and GFF1812 are separated by 350 nucleotides GFF1812 and GFF1813 are separated by 17 nucleotides
GFF1811 - hypothetical protein, at 678,404 to 679,417
GFF1811
GFF1812 - Porphobilinogen synthase (EC 4.2.1.24), at 679,768 to 680,769
GFF1812
GFF1813 - Magnesium and cobalt transport protein CorA, at 680,787 to 681,896
GFF1813
Position (kb) 679
680
681 Strain fitness (log2 ratio) -1
0
1
2
3 at 679.099 kb on + strand, within GFF1811 at 679.099 kb on + strand, within GFF1811 at 679.099 kb on + strand, within GFF1811 at 679.100 kb on - strand, within GFF1811 at 679.100 kb on - strand, within GFF1811 at 679.100 kb on - strand, within GFF1811 at 679.257 kb on + strand, within GFF1811 at 679.257 kb on + strand, within GFF1811 at 679.257 kb on + strand, within GFF1811 at 679.257 kb on + strand, within GFF1811 at 679.257 kb on + strand, within GFF1811 at 679.257 kb on + strand, within GFF1811 at 679.257 kb on + strand, within GFF1811 at 679.257 kb on + strand, within GFF1811 at 679.258 kb on - strand, within GFF1811 at 679.258 kb on - strand, within GFF1811 at 679.258 kb on - strand, within GFF1811 at 679.258 kb on - strand, within GFF1811 at 679.258 kb on - strand, within GFF1811 at 679.258 kb on - strand, within GFF1811 at 679.258 kb on - strand, within GFF1811 at 679.258 kb on - strand, within GFF1811 at 679.316 kb on - strand at 679.569 kb on - strand at 679.592 kb on + strand at 679.592 kb on + strand at 679.592 kb on + strand at 679.592 kb on + strand at 679.592 kb on + strand at 679.592 kb on + strand at 679.592 kb on + strand at 679.593 kb on - strand at 679.593 kb on - strand at 679.593 kb on - strand at 679.593 kb on - strand at 679.633 kb on - strand at 680.824 kb on - strand at 680.862 kb on + strand at 680.862 kb on + strand at 680.862 kb on + strand at 680.862 kb on + strand at 680.862 kb on + strand at 680.862 kb on + strand at 680.862 kb on + strand at 680.862 kb on + strand at 680.862 kb on + strand at 680.863 kb on - strand at 680.863 kb on - strand at 680.863 kb on - strand at 680.863 kb on - strand at 680.863 kb on - strand at 680.863 kb on - strand at 681.000 kb on + strand, within GFF1813 at 681.001 kb on - strand, within GFF1813 at 681.001 kb on - strand, within GFF1813 at 681.006 kb on + strand, within GFF1813 at 681.006 kb on + strand, within GFF1813 at 681.006 kb on + strand, within GFF1813 at 681.006 kb on + strand, within GFF1813 at 681.006 kb on + strand, within GFF1813 at 681.007 kb on - strand, within GFF1813 at 681.007 kb on - strand, within GFF1813 at 681.007 kb on - strand, within GFF1813 at 681.007 kb on - strand, within GFF1813 at 681.007 kb on - strand, within GFF1813 at 681.007 kb on - strand, within GFF1813 at 681.007 kb on - strand, within GFF1813 at 681.018 kb on + strand, within GFF1813 at 681.219 kb on + strand, within GFF1813 at 681.220 kb on - strand, within GFF1813 at 681.334 kb on - strand, within GFF1813
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 679,099 + GFF1811 0.69 +0.3 679,099 + GFF1811 0.69 -0.2 679,099 + GFF1811 0.69 +0.4 679,100 - GFF1811 0.69 +1.3 679,100 - GFF1811 0.69 +0.3 679,100 - GFF1811 0.69 +1.1 679,257 + GFF1811 0.84 +0.7 679,257 + GFF1811 0.84 +0.5 679,257 + GFF1811 0.84 +0.2 679,257 + GFF1811 0.84 +0.3 679,257 + GFF1811 0.84 +0.0 679,257 + GFF1811 0.84 +0.7 679,257 + GFF1811 0.84 +0.8 679,257 + GFF1811 0.84 +0.8 679,258 - GFF1811 0.84 -1.1 679,258 - GFF1811 0.84 +0.7 679,258 - GFF1811 0.84 +0.7 679,258 - GFF1811 0.84 +1.0 679,258 - GFF1811 0.84 -0.1 679,258 - GFF1811 0.84 -0.6 679,258 - GFF1811 0.84 +0.0 679,258 - GFF1811 0.84 -0.3 679,316 - +0.6 679,569 - +0.8 679,592 + +0.0 679,592 + -0.7 679,592 + -0.7 679,592 + -0.1 679,592 + +0.5 679,592 + +0.6 679,592 + +0.3 679,593 - -0.8 679,593 - -0.1 679,593 - +0.0 679,593 - -0.2 679,633 - +0.5 680,824 - +0.7 680,862 + +1.3 680,862 + +3.3 680,862 + -0.5 680,862 + +1.3 680,862 + -0.2 680,862 + +0.2 680,862 + +0.2 680,862 + -0.1 680,862 + +2.3 680,863 - +0.3 680,863 - +0.5 680,863 - +1.3 680,863 - +0.2 680,863 - +0.0 680,863 - +0.5 681,000 + GFF1813 0.19 -0.7 681,001 - GFF1813 0.19 -0.5 681,001 - GFF1813 0.19 +0.2 681,006 + GFF1813 0.20 +0.2 681,006 + GFF1813 0.20 +0.2 681,006 + GFF1813 0.20 -0.2 681,006 + GFF1813 0.20 -0.6 681,006 + GFF1813 0.20 +0.3 681,007 - GFF1813 0.20 -0.3 681,007 - GFF1813 0.20 +0.3 681,007 - GFF1813 0.20 +1.6 681,007 - GFF1813 0.20 +0.6 681,007 - GFF1813 0.20 +0.1 681,007 - GFF1813 0.20 -1.3 681,007 - GFF1813 0.20 +0.1 681,018 + GFF1813 0.21 -0.5 681,219 + GFF1813 0.39 -0.1 681,220 - GFF1813 0.39 -0.7 681,334 - GFF1813 0.49 -0.9
Or see this region's nucleotide sequence