Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1806

Experiment: Ying_OrganicAcid7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1804 and GFF1805 are separated by 158 nucleotidesGFF1805 and GFF1806 are separated by 134 nucleotidesGFF1806 and GFF1807 are separated by 41 nucleotidesGFF1807 and GFF1808 are separated by 6 nucleotides GFF1804 - SSU ribosomal protein S7p (S5e), at 673,287 to 673,757 GFF1804 GFF1805 - SSU ribosomal protein S12p (S23e), at 673,916 to 674,293 GFF1805 GFF1806 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 674,428 to 675,606 GFF1806 GFF1807 - Alpha/beta hydrolase, at 675,648 to 676,271 GFF1807 GFF1808 - Ferredoxin, 2Fe-2S, at 676,278 to 676,616 GFF1808 Position (kb) 674 675 676Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 673.864 kb on - strandat 673.864 kb on - strandat 673.864 kb on - strandat 673.918 kb on - strandat 673.918 kb on - strandat 673.918 kb on - strandat 673.918 kb on - strandat 674.361 kb on - strandat 674.362 kb on - strandat 674.362 kb on - strandat 674.362 kb on - strandat 674.362 kb on - strandat 674.362 kb on - strandat 674.362 kb on - strandat 674.362 kb on - strandat 674.362 kb on - strandat 674.367 kb on - strandat 674.367 kb on - strandat 674.367 kb on - strandat 674.367 kb on - strandat 674.367 kb on - strandat 674.429 kb on + strandat 674.430 kb on - strandat 674.430 kb on - strandat 674.762 kb on + strand, within GFF1806at 674.762 kb on + strand, within GFF1806at 674.762 kb on + strand, within GFF1806at 674.762 kb on + strand, within GFF1806at 674.762 kb on + strand, within GFF1806at 674.763 kb on - strand, within GFF1806at 674.763 kb on - strand, within GFF1806at 674.763 kb on - strand, within GFF1806at 674.906 kb on + strand, within GFF1806at 674.906 kb on + strand, within GFF1806at 674.906 kb on + strand, within GFF1806at 674.906 kb on + strand, within GFF1806at 674.907 kb on - strand, within GFF1806at 674.907 kb on - strand, within GFF1806at 674.944 kb on + strand, within GFF1806at 674.944 kb on + strand, within GFF1806at 674.945 kb on - strand, within GFF1806at 674.945 kb on - strand, within GFF1806at 674.945 kb on - strand, within GFF1806at 674.945 kb on - strand, within GFF1806at 674.945 kb on - strand, within GFF1806at 675.015 kb on - strand, within GFF1806at 675.029 kb on + strand, within GFF1806at 675.029 kb on + strand, within GFF1806at 675.029 kb on + strand, within GFF1806at 675.029 kb on + strand, within GFF1806at 675.029 kb on + strand, within GFF1806at 675.030 kb on - strand, within GFF1806at 675.030 kb on - strand, within GFF1806at 675.030 kb on - strand, within GFF1806at 675.030 kb on - strand, within GFF1806at 675.030 kb on - strand, within GFF1806at 675.030 kb on - strand, within GFF1806at 675.032 kb on + strand, within GFF1806at 675.032 kb on + strand, within GFF1806at 675.032 kb on + strand, within GFF1806at 675.033 kb on - strand, within GFF1806at 675.033 kb on - strand, within GFF1806at 675.041 kb on + strand, within GFF1806at 675.041 kb on + strand, within GFF1806at 675.041 kb on + strand, within GFF1806at 675.041 kb on + strand, within GFF1806at 675.041 kb on + strand, within GFF1806at 675.041 kb on + strand, within GFF1806at 675.041 kb on + strand, within GFF1806at 675.041 kb on + strand, within GFF1806at 675.041 kb on + strand, within GFF1806at 675.041 kb on + strand, within GFF1806at 675.041 kb on + strand, within GFF1806at 675.041 kb on + strand, within GFF1806at 675.041 kb on + strand, within GFF1806at 675.041 kb on + strand, within GFF1806at 675.042 kb on - strand, within GFF1806at 675.042 kb on - strand, within GFF1806at 675.042 kb on - strand, within GFF1806at 675.042 kb on - strand, within GFF1806at 675.042 kb on - strand, within GFF1806at 675.137 kb on + strand, within GFF1806at 675.138 kb on - strand, within GFF1806at 675.138 kb on - strand, within GFF1806at 675.404 kb on + strand, within GFF1806at 675.404 kb on + strand, within GFF1806at 675.404 kb on + strand, within GFF1806at 675.404 kb on + strand, within GFF1806at 675.404 kb on + strand, within GFF1806at 675.405 kb on - strand, within GFF1806at 675.405 kb on - strand, within GFF1806at 675.405 kb on - strand, within GFF1806at 675.500 kb on + strandat 675.500 kb on + strandat 675.500 kb on + strandat 675.501 kb on - strandat 675.501 kb on - strandat 675.501 kb on - strandat 675.501 kb on - strandat 675.501 kb on - strandat 675.501 kb on - strandat 675.501 kb on - strandat 675.501 kb on - strandat 675.501 kb on - strandat 675.501 kb on - strandat 675.885 kb on - strand, within GFF1807at 676.036 kb on + strand, within GFF1807at 676.036 kb on + strand, within GFF1807at 676.036 kb on + strand, within GFF1807at 676.037 kb on - strand, within GFF1807at 676.037 kb on - strand, within GFF1807at 676.142 kb on + strand, within GFF1807at 676.142 kb on + strand, within GFF1807at 676.142 kb on + strand, within GFF1807at 676.143 kb on - strand, within GFF1807at 676.143 kb on - strand, within GFF1807at 676.375 kb on + strand, within GFF1808at 676.375 kb on + strand, within GFF1808at 676.375 kb on + strand, within GFF1808at 676.375 kb on + strand, within GFF1808at 676.375 kb on + strand, within GFF1808at 676.375 kb on + strand, within GFF1808at 676.375 kb on + strand, within GFF1808at 676.375 kb on + strand, within GFF1808at 676.375 kb on + strand, within GFF1808at 676.375 kb on + strand, within GFF1808at 676.375 kb on + strand, within GFF1808at 676.375 kb on + strand, within GFF1808at 676.375 kb on + strand, within GFF1808at 676.376 kb on - strand, within GFF1808at 676.376 kb on - strand, within GFF1808at 676.376 kb on - strand, within GFF1808at 676.376 kb on - strand, within GFF1808at 676.376 kb on - strand, within GFF1808at 676.376 kb on - strand, within GFF1808at 676.376 kb on - strand, within GFF1808at 676.376 kb on - strand, within GFF1808at 676.376 kb on - strand, within GFF1808at 676.376 kb on - strand, within GFF1808at 676.376 kb on - strand, within GFF1808at 676.376 kb on - strand, within GFF1808at 676.376 kb on - strand, within GFF1808at 676.376 kb on - strand, within GFF1808at 676.376 kb on - strand, within GFF1808at 676.376 kb on - strand, within GFF1808at 676.381 kb on + strand, within GFF1808at 676.381 kb on + strand, within GFF1808at 676.382 kb on - strand, within GFF1808at 676.382 kb on - strand, within GFF1808at 676.382 kb on - strand, within GFF1808at 676.399 kb on + strand, within GFF1808at 676.594 kb on + strandat 676.594 kb on + strandat 676.594 kb on + strandat 676.594 kb on + strandat 676.594 kb on + strandat 676.594 kb on + strandat 676.594 kb on + strandat 676.595 kb on - strandat 676.595 kb on - strandat 676.595 kb on - strandat 676.595 kb on - strandat 676.595 kb on - strandat 676.597 kb on + strandat 676.597 kb on + strandat 676.597 kb on + strandat 676.598 kb on - strandat 676.598 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
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673,864 - -1.8
673,864 - -1.5
673,864 - -0.3
673,918 - -1.8
673,918 - -0.5
673,918 - -1.0
673,918 - +1.1
674,361 - -0.5
674,362 - -3.5
674,362 - -0.3
674,362 - +0.5
674,362 - -2.1
674,362 - -2.9
674,362 - +0.7
674,362 - -2.1
674,362 - -0.3
674,367 - -0.1
674,367 - -0.5
674,367 - -1.8
674,367 - -0.1
674,367 - +0.9
674,429 + +0.1
674,430 - +0.5
674,430 - -0.1
674,762 + GFF1806 0.28 +0.0
674,762 + GFF1806 0.28 -0.3
674,762 + GFF1806 0.28 -0.2
674,762 + GFF1806 0.28 +0.1
674,762 + GFF1806 0.28 -0.3
674,763 - GFF1806 0.28 -1.4
674,763 - GFF1806 0.28 -0.3
674,763 - GFF1806 0.28 -0.1
674,906 + GFF1806 0.41 -0.6
674,906 + GFF1806 0.41 -0.2
674,906 + GFF1806 0.41 -0.4
674,906 + GFF1806 0.41 +0.0
674,907 - GFF1806 0.41 +0.7
674,907 - GFF1806 0.41 -0.2
674,944 + GFF1806 0.44 -0.9
674,944 + GFF1806 0.44 +0.3
674,945 - GFF1806 0.44 -0.6
674,945 - GFF1806 0.44 -0.5
674,945 - GFF1806 0.44 -0.6
674,945 - GFF1806 0.44 -0.4
674,945 - GFF1806 0.44 +0.9
675,015 - GFF1806 0.50 -0.6
675,029 + GFF1806 0.51 +0.2
675,029 + GFF1806 0.51 -0.7
675,029 + GFF1806 0.51 +0.6
675,029 + GFF1806 0.51 -0.1
675,029 + GFF1806 0.51 +1.0
675,030 - GFF1806 0.51 -0.4
675,030 - GFF1806 0.51 +0.0
675,030 - GFF1806 0.51 -0.4
675,030 - GFF1806 0.51 -0.6
675,030 - GFF1806 0.51 +1.3
675,030 - GFF1806 0.51 -0.4
675,032 + GFF1806 0.51 -0.4
675,032 + GFF1806 0.51 +0.3
675,032 + GFF1806 0.51 -0.0
675,033 - GFF1806 0.51 +0.4
675,033 - GFF1806 0.51 +1.3
675,041 + GFF1806 0.52 +1.7
675,041 + GFF1806 0.52 +0.1
675,041 + GFF1806 0.52 -0.7
675,041 + GFF1806 0.52 -0.4
675,041 + GFF1806 0.52 -0.7
675,041 + GFF1806 0.52 -0.1
675,041 + GFF1806 0.52 -0.0
675,041 + GFF1806 0.52 +0.3
675,041 + GFF1806 0.52 -0.2
675,041 + GFF1806 0.52 -0.6
675,041 + GFF1806 0.52 -0.6
675,041 + GFF1806 0.52 +0.3
675,041 + GFF1806 0.52 +0.3
675,041 + GFF1806 0.52 +1.3
675,042 - GFF1806 0.52 +0.0
675,042 - GFF1806 0.52 +0.3
675,042 - GFF1806 0.52 -1.0
675,042 - GFF1806 0.52 +0.3
675,042 - GFF1806 0.52 -2.7
675,137 + GFF1806 0.60 +1.3
675,138 - GFF1806 0.60 +0.3
675,138 - GFF1806 0.60 -0.5
675,404 + GFF1806 0.83 -0.3
675,404 + GFF1806 0.83 -0.3
675,404 + GFF1806 0.83 -0.1
675,404 + GFF1806 0.83 +0.3
675,404 + GFF1806 0.83 -0.1
675,405 - GFF1806 0.83 +0.1
675,405 - GFF1806 0.83 +1.3
675,405 - GFF1806 0.83 +0.1
675,500 + +2.3
675,500 + +0.0
675,500 + -0.1
675,501 - -0.8
675,501 - -1.4
675,501 - -0.5
675,501 - -0.4
675,501 - +1.0
675,501 - -0.5
675,501 - -0.1
675,501 - -0.6
675,501 - +0.2
675,501 - -0.4
675,885 - GFF1807 0.38 -1.3
676,036 + GFF1807 0.62 -1.9
676,036 + GFF1807 0.62 -0.2
676,036 + GFF1807 0.62 +0.0
676,037 - GFF1807 0.62 -0.7
676,037 - GFF1807 0.62 +0.9
676,142 + GFF1807 0.79 -0.7
676,142 + GFF1807 0.79 -2.4
676,142 + GFF1807 0.79 +0.1
676,143 - GFF1807 0.79 -0.7
676,143 - GFF1807 0.79 -0.5
676,375 + GFF1808 0.29 -0.1
676,375 + GFF1808 0.29 -0.1
676,375 + GFF1808 0.29 +0.3
676,375 + GFF1808 0.29 -0.1
676,375 + GFF1808 0.29 -0.4
676,375 + GFF1808 0.29 -0.3
676,375 + GFF1808 0.29 -0.7
676,375 + GFF1808 0.29 -0.7
676,375 + GFF1808 0.29 -0.7
676,375 + GFF1808 0.29 +0.3
676,375 + GFF1808 0.29 -1.0
676,375 + GFF1808 0.29 +0.3
676,375 + GFF1808 0.29 +0.0
676,376 - GFF1808 0.29 -0.0
676,376 - GFF1808 0.29 +0.1
676,376 - GFF1808 0.29 -0.3
676,376 - GFF1808 0.29 +0.9
676,376 - GFF1808 0.29 -0.3
676,376 - GFF1808 0.29 -1.7
676,376 - GFF1808 0.29 +0.9
676,376 - GFF1808 0.29 +0.1
676,376 - GFF1808 0.29 +1.0
676,376 - GFF1808 0.29 -0.2
676,376 - GFF1808 0.29 +0.1
676,376 - GFF1808 0.29 +0.8
676,376 - GFF1808 0.29 +0.1
676,376 - GFF1808 0.29 -0.7
676,376 - GFF1808 0.29 +0.2
676,376 - GFF1808 0.29 -0.1
676,381 + GFF1808 0.30 -0.3
676,381 + GFF1808 0.30 -0.3
676,382 - GFF1808 0.31 -0.2
676,382 - GFF1808 0.31 -0.1
676,382 - GFF1808 0.31 -0.5
676,399 + GFF1808 0.36 -0.2
676,594 + -1.1
676,594 + -0.2
676,594 + +0.3
676,594 + -0.2
676,594 + +0.3
676,594 + +0.2
676,594 + +0.2
676,595 - -0.2
676,595 - -0.7
676,595 - -0.2
676,595 - -1.1
676,595 - +1.3
676,597 + +0.7
676,597 + +0.7
676,597 + +0.3
676,598 - -1.1
676,598 - +0.9

Or see this region's nucleotide sequence