Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1785 and GFF2354 are separated by 112 nucleotides GFF2354 and GFF1786 are separated by 59 nucleotides GFF1786 and GFF1787 are separated by 30 nucleotides GFF1787 and GFF1788 are separated by 5 nucleotides GFF1788 and GFF1789 are separated by 43 nucleotides
GFF1785 - hypothetical protein, at 649,549 to 649,917
GFF1785
GFF2354 - tRNA-Phe-GAA, at 650,030 to 650,102
GFF2354
GFF1786 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 650,162 to 650,860
GFF1786
GFF1787 - Nitrogen regulation protein NtrY (EC 2.7.3.-), at 650,891 to 653,179
GFF1787
GFF1788 - Probable proline rich signal peptide protein, at 653,185 to 653,862
GFF1788
GFF1789 - Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-), at 653,906 to 655,201
GFF1789
Position (kb) 650
651
652
653
654 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 650.123 kb on - strand at 650.123 kb on - strand at 650.896 kb on + strand at 650.897 kb on - strand at 650.897 kb on - strand at 650.897 kb on - strand at 650.912 kb on + strand at 650.912 kb on + strand at 650.912 kb on + strand at 650.912 kb on + strand at 650.912 kb on + strand at 651.045 kb on + strand at 651.045 kb on + strand at 651.045 kb on + strand at 651.045 kb on + strand at 651.045 kb on + strand at 651.045 kb on + strand at 651.045 kb on + strand at 651.045 kb on + strand at 651.045 kb on + strand at 651.046 kb on - strand at 651.046 kb on - strand at 651.046 kb on - strand at 651.046 kb on - strand at 651.046 kb on - strand at 651.046 kb on - strand at 651.297 kb on + strand, within GFF1787 at 651.298 kb on - strand, within GFF1787 at 652.218 kb on + strand, within GFF1787 at 652.218 kb on + strand, within GFF1787 at 652.218 kb on + strand, within GFF1787 at 652.218 kb on + strand, within GFF1787 at 652.218 kb on + strand, within GFF1787 at 652.218 kb on + strand, within GFF1787 at 652.219 kb on - strand, within GFF1787 at 652.219 kb on - strand, within GFF1787 at 652.219 kb on - strand, within GFF1787 at 652.219 kb on - strand, within GFF1787 at 652.219 kb on - strand, within GFF1787 at 652.219 kb on - strand, within GFF1787 at 652.219 kb on - strand, within GFF1787 at 652.219 kb on - strand, within GFF1787 at 652.219 kb on - strand, within GFF1787 at 652.219 kb on - strand, within GFF1787 at 652.219 kb on - strand, within GFF1787 at 652.219 kb on - strand, within GFF1787 at 652.260 kb on + strand, within GFF1787 at 652.260 kb on + strand, within GFF1787 at 652.260 kb on + strand, within GFF1787 at 652.261 kb on - strand, within GFF1787 at 652.336 kb on - strand, within GFF1787 at 652.336 kb on - strand, within GFF1787 at 652.507 kb on + strand, within GFF1787 at 652.507 kb on + strand, within GFF1787 at 652.508 kb on - strand, within GFF1787 at 652.800 kb on + strand, within GFF1787 at 652.801 kb on - strand, within GFF1787 at 652.812 kb on + strand, within GFF1787 at 652.812 kb on + strand, within GFF1787 at 652.812 kb on + strand, within GFF1787 at 652.812 kb on + strand, within GFF1787 at 652.812 kb on + strand, within GFF1787 at 652.812 kb on + strand, within GFF1787 at 652.812 kb on + strand, within GFF1787 at 652.812 kb on + strand, within GFF1787 at 652.812 kb on + strand, within GFF1787 at 652.812 kb on + strand, within GFF1787 at 652.813 kb on - strand, within GFF1787 at 652.813 kb on - strand, within GFF1787 at 652.813 kb on - strand, within GFF1787 at 652.998 kb on + strand at 652.999 kb on - strand at 652.999 kb on - strand at 652.999 kb on - strand at 653.510 kb on + strand, within GFF1788 at 653.510 kb on + strand, within GFF1788 at 653.511 kb on - strand, within GFF1788 at 653.511 kb on - strand, within GFF1788 at 653.511 kb on - strand, within GFF1788 at 653.588 kb on + strand, within GFF1788 at 653.588 kb on + strand, within GFF1788 at 653.639 kb on + strand, within GFF1788 at 653.654 kb on + strand, within GFF1788 at 653.678 kb on + strand, within GFF1788 at 653.678 kb on + strand, within GFF1788 at 653.679 kb on - strand, within GFF1788 at 653.679 kb on - strand, within GFF1788 at 653.679 kb on - strand, within GFF1788 at 653.696 kb on + strand, within GFF1788 at 653.696 kb on + strand, within GFF1788 at 653.696 kb on + strand, within GFF1788 at 653.696 kb on + strand, within GFF1788 at 653.696 kb on + strand, within GFF1788 at 653.696 kb on + strand, within GFF1788 at 653.696 kb on + strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.934 kb on + strand at 653.949 kb on + strand at 653.949 kb on + strand at 653.949 kb on + strand at 653.949 kb on + strand at 653.949 kb on + strand at 653.950 kb on - strand at 653.950 kb on - strand at 653.950 kb on - strand at 654.105 kb on + strand, within GFF1789 at 654.105 kb on + strand, within GFF1789 at 654.105 kb on + strand, within GFF1789 at 654.105 kb on + strand, within GFF1789 at 654.105 kb on + strand, within GFF1789 at 654.105 kb on + strand, within GFF1789 at 654.105 kb on + strand, within GFF1789 at 654.105 kb on + strand, within GFF1789 at 654.106 kb on - strand, within GFF1789 at 654.106 kb on - strand, within GFF1789 at 654.106 kb on - strand, within GFF1789 at 654.106 kb on - strand, within GFF1789 at 654.106 kb on - strand, within GFF1789 at 654.106 kb on - strand, within GFF1789 at 654.106 kb on - strand, within GFF1789
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 650,123 - +0.3 650,123 - +0.7 650,896 + -0.3 650,897 - -1.2 650,897 - +1.3 650,897 - -1.5 650,912 + -1.8 650,912 + -2.4 650,912 + -1.5 650,912 + -1.3 650,912 + +0.3 651,045 + -1.1 651,045 + -1.7 651,045 + +0.0 651,045 + -3.3 651,045 + -1.5 651,045 + -2.4 651,045 + -0.3 651,045 + -2.4 651,045 + -2.0 651,046 - -1.0 651,046 - -0.7 651,046 - -2.4 651,046 - -3.2 651,046 - -1.3 651,046 - +0.3 651,297 + GFF1787 0.18 -0.3 651,298 - GFF1787 0.18 -1.0 652,218 + GFF1787 0.58 -2.8 652,218 + GFF1787 0.58 -2.4 652,218 + GFF1787 0.58 -3.2 652,218 + GFF1787 0.58 -0.7 652,218 + GFF1787 0.58 -2.3 652,218 + GFF1787 0.58 -1.3 652,219 - GFF1787 0.58 -2.8 652,219 - GFF1787 0.58 -2.0 652,219 - GFF1787 0.58 -0.7 652,219 - GFF1787 0.58 -0.7 652,219 - GFF1787 0.58 -1.0 652,219 - GFF1787 0.58 -0.3 652,219 - GFF1787 0.58 -2.3 652,219 - GFF1787 0.58 -1.8 652,219 - GFF1787 0.58 -1.5 652,219 - GFF1787 0.58 -1.3 652,219 - GFF1787 0.58 -2.3 652,219 - GFF1787 0.58 -2.9 652,260 + GFF1787 0.60 -2.1 652,260 + GFF1787 0.60 -2.9 652,260 + GFF1787 0.60 -2.5 652,261 - GFF1787 0.60 -3.0 652,336 - GFF1787 0.63 -1.7 652,336 - GFF1787 0.63 -0.3 652,507 + GFF1787 0.71 -2.0 652,507 + GFF1787 0.71 -2.1 652,508 - GFF1787 0.71 -1.3 652,800 + GFF1787 0.83 -0.7 652,801 - GFF1787 0.83 -3.0 652,812 + GFF1787 0.84 -4.0 652,812 + GFF1787 0.84 -2.8 652,812 + GFF1787 0.84 -1.5 652,812 + GFF1787 0.84 -0.7 652,812 + GFF1787 0.84 -0.7 652,812 + GFF1787 0.84 -2.1 652,812 + GFF1787 0.84 -1.6 652,812 + GFF1787 0.84 -2.3 652,812 + GFF1787 0.84 -2.0 652,812 + GFF1787 0.84 -2.7 652,813 - GFF1787 0.84 -3.1 652,813 - GFF1787 0.84 -2.6 652,813 - GFF1787 0.84 -2.1 652,998 + -2.3 652,999 - -1.7 652,999 - -2.0 652,999 - -0.5 653,510 + GFF1788 0.48 -1.3 653,510 + GFF1788 0.48 -2.5 653,511 - GFF1788 0.48 -4.6 653,511 - GFF1788 0.48 -1.3 653,511 - GFF1788 0.48 -1.8 653,588 + GFF1788 0.59 -3.6 653,588 + GFF1788 0.59 -2.4 653,639 + GFF1788 0.67 -0.7 653,654 + GFF1788 0.69 -2.4 653,678 + GFF1788 0.73 -1.5 653,678 + GFF1788 0.73 -2.6 653,679 - GFF1788 0.73 -2.8 653,679 - GFF1788 0.73 -3.7 653,679 - GFF1788 0.73 -3.3 653,696 + GFF1788 0.75 -0.3 653,696 + GFF1788 0.75 -0.3 653,696 + GFF1788 0.75 -1.3 653,696 + GFF1788 0.75 -1.3 653,696 + GFF1788 0.75 -2.9 653,696 + GFF1788 0.75 -0.3 653,696 + GFF1788 0.75 -2.0 653,697 - GFF1788 0.76 -1.5 653,697 - GFF1788 0.76 -1.5 653,697 - GFF1788 0.76 -1.8 653,697 - GFF1788 0.76 -2.5 653,697 - GFF1788 0.76 -2.8 653,697 - GFF1788 0.76 -2.9 653,697 - GFF1788 0.76 -2.3 653,697 - GFF1788 0.76 -2.1 653,697 - GFF1788 0.76 +0.3 653,934 + +0.3 653,949 + +1.3 653,949 + -1.1 653,949 + +0.3 653,949 + -1.4 653,949 + -0.6 653,950 - -0.4 653,950 - -2.4 653,950 - -0.4 654,105 + GFF1789 0.15 -0.9 654,105 + GFF1789 0.15 +0.6 654,105 + GFF1789 0.15 -0.6 654,105 + GFF1789 0.15 +0.1 654,105 + GFF1789 0.15 -0.8 654,105 + GFF1789 0.15 +0.2 654,105 + GFF1789 0.15 +0.3 654,105 + GFF1789 0.15 +0.6 654,106 - GFF1789 0.15 -0.8 654,106 - GFF1789 0.15 -0.2 654,106 - GFF1789 0.15 -0.6 654,106 - GFF1789 0.15 -0.7 654,106 - GFF1789 0.15 +0.0 654,106 - GFF1789 0.15 -0.1 654,106 - GFF1789 0.15 -0.1
Or see this region's nucleotide sequence