Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1346 and GFF1347 are separated by 6 nucleotides GFF1347 and GFF1348 are separated by 5 nucleotides GFF1348 and GFF1349 are separated by 103 nucleotides
GFF1346 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 199,012 to 200,001
GFF1346
GFF1347 - FIG001196: Membrane protein YedZ, at 200,008 to 200,631
GFF1347
GFF1348 - Putative sulfite oxidase subunit YedY, at 200,637 to 201,641
GFF1348
GFF1349 - Cytochrome c-type biogenesis protein CcsA/ResC, at 201,745 to 203,115
GFF1349
Position (kb) 200
201
202 Strain fitness (log2 ratio) -2
-1
0
1
2 at 200.066 kb on + strand at 200.066 kb on + strand at 200.066 kb on + strand at 200.066 kb on + strand at 200.066 kb on + strand at 200.067 kb on - strand at 200.067 kb on - strand at 200.144 kb on + strand, within GFF1347 at 200.144 kb on + strand, within GFF1347 at 200.144 kb on + strand, within GFF1347 at 200.144 kb on + strand, within GFF1347 at 200.144 kb on + strand, within GFF1347 at 200.144 kb on + strand, within GFF1347 at 200.145 kb on - strand, within GFF1347 at 200.145 kb on - strand, within GFF1347 at 200.145 kb on - strand, within GFF1347 at 200.145 kb on - strand, within GFF1347 at 200.145 kb on - strand, within GFF1347 at 200.145 kb on - strand, within GFF1347 at 200.324 kb on + strand, within GFF1347 at 200.324 kb on + strand, within GFF1347 at 200.325 kb on - strand, within GFF1347 at 200.348 kb on + strand, within GFF1347 at 200.349 kb on - strand, within GFF1347 at 200.349 kb on - strand, within GFF1347 at 200.349 kb on - strand, within GFF1347 at 200.349 kb on - strand, within GFF1347 at 200.641 kb on + strand at 200.641 kb on + strand at 200.642 kb on - strand at 200.642 kb on - strand at 200.642 kb on - strand at 200.668 kb on + strand at 200.692 kb on + strand at 200.809 kb on + strand, within GFF1348 at 200.810 kb on - strand, within GFF1348 at 200.810 kb on - strand, within GFF1348 at 200.810 kb on - strand, within GFF1348 at 200.819 kb on - strand, within GFF1348 at 200.819 kb on - strand, within GFF1348 at 200.819 kb on - strand, within GFF1348 at 200.819 kb on - strand, within GFF1348 at 200.819 kb on - strand, within GFF1348 at 200.908 kb on + strand, within GFF1348 at 200.908 kb on + strand, within GFF1348 at 200.968 kb on + strand, within GFF1348 at 200.968 kb on + strand, within GFF1348 at 201.031 kb on + strand, within GFF1348 at 201.032 kb on - strand, within GFF1348 at 201.032 kb on - strand, within GFF1348 at 201.032 kb on - strand, within GFF1348 at 201.032 kb on - strand, within GFF1348 at 201.032 kb on - strand, within GFF1348 at 201.032 kb on - strand, within GFF1348 at 201.032 kb on - strand, within GFF1348 at 201.032 kb on - strand, within GFF1348 at 201.103 kb on + strand, within GFF1348 at 201.103 kb on + strand, within GFF1348 at 201.104 kb on - strand, within GFF1348 at 201.104 kb on - strand, within GFF1348 at 201.205 kb on + strand, within GFF1348 at 201.205 kb on + strand, within GFF1348 at 201.205 kb on + strand, within GFF1348 at 201.206 kb on - strand, within GFF1348 at 201.322 kb on + strand, within GFF1348 at 201.323 kb on - strand, within GFF1348 at 201.358 kb on + strand, within GFF1348 at 201.358 kb on + strand, within GFF1348 at 201.358 kb on + strand, within GFF1348 at 201.358 kb on + strand, within GFF1348 at 201.359 kb on - strand, within GFF1348 at 201.359 kb on - strand, within GFF1348 at 201.359 kb on - strand, within GFF1348 at 201.370 kb on + strand, within GFF1348 at 201.370 kb on + strand, within GFF1348 at 201.371 kb on - strand, within GFF1348 at 201.371 kb on - strand, within GFF1348 at 201.388 kb on + strand, within GFF1348 at 201.388 kb on + strand, within GFF1348 at 201.389 kb on - strand, within GFF1348 at 201.389 kb on - strand, within GFF1348 at 201.389 kb on - strand, within GFF1348 at 201.588 kb on + strand at 201.588 kb on + strand at 201.588 kb on + strand at 201.589 kb on - strand at 201.589 kb on - strand at 201.589 kb on - strand at 201.704 kb on + strand at 201.704 kb on + strand at 201.704 kb on + strand at 201.704 kb on + strand at 201.704 kb on + strand at 201.705 kb on - strand at 201.705 kb on - strand at 201.705 kb on - strand at 201.705 kb on - strand at 201.705 kb on - strand at 201.705 kb on - strand at 201.705 kb on - strand at 201.705 kb on - strand at 201.705 kb on - strand at 201.758 kb on + strand at 202.265 kb on + strand, within GFF1349 at 202.482 kb on - strand, within GFF1349
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 200,066 + +0.2 200,066 + +0.1 200,066 + +0.1 200,066 + +0.5 200,066 + +0.6 200,067 - +0.1 200,067 - -0.0 200,144 + GFF1347 0.22 +0.3 200,144 + GFF1347 0.22 -0.0 200,144 + GFF1347 0.22 -0.4 200,144 + GFF1347 0.22 -1.4 200,144 + GFF1347 0.22 +0.5 200,144 + GFF1347 0.22 -0.4 200,145 - GFF1347 0.22 -0.6 200,145 - GFF1347 0.22 +0.8 200,145 - GFF1347 0.22 -0.4 200,145 - GFF1347 0.22 +0.6 200,145 - GFF1347 0.22 -0.0 200,145 - GFF1347 0.22 -0.0 200,324 + GFF1347 0.51 +0.2 200,324 + GFF1347 0.51 -0.2 200,325 - GFF1347 0.51 +0.4 200,348 + GFF1347 0.54 -1.1 200,349 - GFF1347 0.55 -0.0 200,349 - GFF1347 0.55 -0.7 200,349 - GFF1347 0.55 -0.1 200,349 - GFF1347 0.55 +0.3 200,641 + -0.2 200,641 + +0.6 200,642 - -0.2 200,642 - -0.4 200,642 - -0.1 200,668 + +0.3 200,692 + +0.5 200,809 + GFF1348 0.17 -0.2 200,810 - GFF1348 0.17 +0.4 200,810 - GFF1348 0.17 -0.3 200,810 - GFF1348 0.17 -0.1 200,819 - GFF1348 0.18 +0.1 200,819 - GFF1348 0.18 -0.1 200,819 - GFF1348 0.18 -0.0 200,819 - GFF1348 0.18 +0.3 200,819 - GFF1348 0.18 -0.9 200,908 + GFF1348 0.27 -1.2 200,908 + GFF1348 0.27 -0.1 200,968 + GFF1348 0.33 +0.7 200,968 + GFF1348 0.33 -0.7 201,031 + GFF1348 0.39 -0.5 201,032 - GFF1348 0.39 -0.2 201,032 - GFF1348 0.39 +0.4 201,032 - GFF1348 0.39 +0.0 201,032 - GFF1348 0.39 -0.6 201,032 - GFF1348 0.39 +0.5 201,032 - GFF1348 0.39 +0.1 201,032 - GFF1348 0.39 +0.6 201,032 - GFF1348 0.39 -0.7 201,103 + GFF1348 0.46 +0.1 201,103 + GFF1348 0.46 -0.1 201,104 - GFF1348 0.46 +0.7 201,104 - GFF1348 0.46 -0.8 201,205 + GFF1348 0.57 +0.1 201,205 + GFF1348 0.57 -0.7 201,205 + GFF1348 0.57 -2.2 201,206 - GFF1348 0.57 -0.2 201,322 + GFF1348 0.68 +1.3 201,323 - GFF1348 0.68 -0.3 201,358 + GFF1348 0.72 +1.0 201,358 + GFF1348 0.72 +0.7 201,358 + GFF1348 0.72 +0.1 201,358 + GFF1348 0.72 -1.3 201,359 - GFF1348 0.72 +0.5 201,359 - GFF1348 0.72 -0.1 201,359 - GFF1348 0.72 -0.1 201,370 + GFF1348 0.73 -0.4 201,370 + GFF1348 0.73 -0.1 201,371 - GFF1348 0.73 +0.6 201,371 - GFF1348 0.73 -0.3 201,388 + GFF1348 0.75 +0.3 201,388 + GFF1348 0.75 +0.0 201,389 - GFF1348 0.75 -0.5 201,389 - GFF1348 0.75 +0.8 201,389 - GFF1348 0.75 +0.2 201,588 + +0.6 201,588 + +1.8 201,588 + +0.1 201,589 - +0.1 201,589 - +0.5 201,589 - -0.3 201,704 + -0.2 201,704 + +0.3 201,704 + -0.7 201,704 + +0.3 201,704 + -0.4 201,705 - -0.7 201,705 - -1.7 201,705 - +1.3 201,705 - -0.7 201,705 - +0.4 201,705 - -0.2 201,705 - -0.1 201,705 - +0.1 201,705 - -0.9 201,758 + -0.1 202,265 + GFF1349 0.38 -0.3 202,482 - GFF1349 0.54 -0.3
Or see this region's nucleotide sequence