Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1256

Experiment: Ying_OrganicAcid7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1254 and GFF1255 are separated by 42 nucleotidesGFF1255 and GFF1256 are separated by 16 nucleotidesGFF1256 and GFF1257 are separated by 23 nucleotides GFF1254 - putative membrane protein, at 111,737 to 112,735 GFF1254 GFF1255 - Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-), at 112,778 to 113,509 GFF1255 GFF1256 - FIG028220: hypothetical protein co-occurring with HEAT repeat protein, at 113,526 to 113,939 GFF1256 GFF1257 - FAD/FMN-containing dehydrogenases, at 113,963 to 117,841 GFF1257 Position (kb) 113 114Strain fitness (log2 ratio) -2 -1 0 1at 112.767 kb on + strandat 113.608 kb on + strand, within GFF1256at 113.609 kb on - strand, within GFF1256at 113.609 kb on - strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.654 kb on - strand, within GFF1256at 113.654 kb on - strand, within GFF1256at 113.654 kb on - strand, within GFF1256at 113.654 kb on - strand, within GFF1256at 113.654 kb on - strand, within GFF1256at 113.710 kb on + strand, within GFF1256at 113.710 kb on + strand, within GFF1256at 113.710 kb on + strand, within GFF1256at 113.711 kb on - strand, within GFF1256at 113.711 kb on - strand, within GFF1256at 113.711 kb on - strand, within GFF1256at 113.812 kb on + strand, within GFF1256at 113.812 kb on + strand, within GFF1256at 113.813 kb on - strand, within GFF1256at 113.813 kb on - strand, within GFF1256at 113.813 kb on - strand, within GFF1256at 113.813 kb on - strand, within GFF1256at 113.813 kb on - strand, within GFF1256at 113.813 kb on - strand, within GFF1256at 114.378 kb on + strand, within GFF1257at 114.540 kb on + strand, within GFF1257at 114.808 kb on - strand, within GFF1257

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
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112,767 + -1.5
113,608 + GFF1256 0.20 -0.2
113,609 - GFF1256 0.20 -0.6
113,609 - GFF1256 0.20 -0.5
113,647 + GFF1256 0.29 +1.0
113,647 + GFF1256 0.29 +0.4
113,647 + GFF1256 0.29 +0.6
113,647 + GFF1256 0.29 -1.7
113,647 + GFF1256 0.29 +0.3
113,647 + GFF1256 0.29 -0.1
113,647 + GFF1256 0.29 -0.1
113,647 + GFF1256 0.29 +1.0
113,647 + GFF1256 0.29 +0.5
113,647 + GFF1256 0.29 -0.0
113,647 + GFF1256 0.29 -0.5
113,648 - GFF1256 0.29 +0.9
113,648 - GFF1256 0.29 -0.6
113,648 - GFF1256 0.29 +0.9
113,648 - GFF1256 0.29 +0.4
113,648 - GFF1256 0.29 +0.5
113,648 - GFF1256 0.29 +0.5
113,648 - GFF1256 0.29 +0.4
113,653 + GFF1256 0.31 -0.1
113,653 + GFF1256 0.31 +0.2
113,653 + GFF1256 0.31 -0.3
113,653 + GFF1256 0.31 +0.3
113,653 + GFF1256 0.31 -0.1
113,653 + GFF1256 0.31 -0.5
113,653 + GFF1256 0.31 +0.4
113,654 - GFF1256 0.31 +0.5
113,654 - GFF1256 0.31 -0.0
113,654 - GFF1256 0.31 +0.6
113,654 - GFF1256 0.31 -1.1
113,654 - GFF1256 0.31 +0.2
113,710 + GFF1256 0.44 +0.2
113,710 + GFF1256 0.44 -0.3
113,710 + GFF1256 0.44 -0.2
113,711 - GFF1256 0.45 -0.2
113,711 - GFF1256 0.45 +0.0
113,711 - GFF1256 0.45 -0.3
113,812 + GFF1256 0.69 +0.6
113,812 + GFF1256 0.69 +1.0
113,813 - GFF1256 0.69 +0.0
113,813 - GFF1256 0.69 -0.1
113,813 - GFF1256 0.69 -0.5
113,813 - GFF1256 0.69 +0.1
113,813 - GFF1256 0.69 +0.2
113,813 - GFF1256 0.69 +0.4
114,378 + GFF1257 0.11 -1.5
114,540 + GFF1257 0.15 -0.3
114,808 - GFF1257 0.22 -1.9

Or see this region's nucleotide sequence