Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1222

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
86,030	-				-0.1
86,179	+		GFF1222	0.15	-1.7
86,179	+		GFF1222	0.15	-2.9
86,179	+		GFF1222	0.15	-1.3
86,180	-		GFF1222	0.15	-2.5
86,180	-		GFF1222	0.15	-1.9
86,503	+		GFF1222	0.46	-2.1
86,503	+		GFF1222	0.46	-3.2
86,503	+		GFF1222	0.46	-1.9
86,503	+		GFF1222	0.46	-4.1
86,899	+		GFF1222	0.85	-1.7
86,899	+		GFF1222	0.85	-3.3
86,899	+		GFF1222	0.85	-2.8
87,071	+				-0.2
87,071	+				+1.3
87,072	-				+0.3
87,072	-				-0.3
87,072	-				-1.1
87,072	-				+0.5
87,072	-				-2.3
87,072	-				-0.1
87,072	-				-0.1
87,072	-				-0.1
87,072	-				-0.2
87,125	+		GFF1223	0.12	+0.3
87,125	+		GFF1223	0.12	+0.0
87,125	+		GFF1223	0.12	+0.6
87,125	+		GFF1223	0.12	+0.0
87,126	-		GFF1223	0.12	+0.4
87,126	-		GFF1223	0.12	-2.9
87,126	-		GFF1223	0.12	-2.1
87,126	-		GFF1223	0.12	+0.1
87,126	-		GFF1223	0.12	-0.9
87,126	-		GFF1223	0.12	-1.7
87,126	-		GFF1223	0.12	-0.1
87,126	-		GFF1223	0.12	+0.0
87,126	-		GFF1223	0.12	-0.8
87,126	-		GFF1223	0.12	-1.1
87,126	-		GFF1223	0.12	+0.2
87,126	-		GFF1223	0.12	-0.3
87,209	+		GFF1223	0.30	-0.5
87,209	+		GFF1223	0.30	-0.3
87,210	-		GFF1223	0.31	-1.8
87,215	+		GFF1223	0.32	-1.0
87,215	+		GFF1223	0.32	-1.1
87,215	+		GFF1223	0.32	-0.7
87,368	+		GFF1223	0.65	-2.7
87,368	+		GFF1223	0.65	-1.9
87,368	+		GFF1223	0.65	-0.5
87,368	+		GFF1223	0.65	-0.6
87,368	+		GFF1223	0.65	-0.5
87,369	-		GFF1223	0.65	-1.5
87,369	-		GFF1223	0.65	-1.1
87,369	-		GFF1223	0.65	-1.1
87,485	+				-0.7
87,485	+				-1.4
87,486	-				-1.0
87,486	-				-1.1
87,486	-				+0.5
87,486	-				+0.3
87,579	+				-1.0
87,609	+				-4.1
87,610	-				-0.1
87,610	-				-0.3
87,610	-				+0.6
87,610	-				-0.2
87,610	-				+0.2
87,796	+		GFF1224	0.61	-0.7
87,796	+		GFF1224	0.61	+0.7
87,796	+		GFF1224	0.61	+0.0
87,796	+		GFF1224	0.61	+0.7
87,796	+		GFF1224	0.61	-0.0
87,796	+		GFF1224	0.61	-0.1
87,796	+		GFF1224	0.61	+0.1
87,796	+		GFF1224	0.61	+0.2
87,796	+		GFF1224	0.61	+0.2
87,797	-		GFF1224	0.61	+0.6
87,797	-		GFF1224	0.61	-0.1
87,797	-		GFF1224	0.61	+0.2
87,797	-		GFF1224	0.61	-0.2
87,797	-		GFF1224	0.61	+1.3
87,797	-		GFF1224	0.61	-0.9
87,797	-		GFF1224	0.61	-0.5
87,797	-		GFF1224	0.61	-0.2
87,797	-		GFF1224	0.61	+0.8
87,797	-		GFF1224	0.61	+1.3
87,856	+		GFF1224	0.84	+1.8
87,856	+		GFF1224	0.84	-0.9
87,856	+		GFF1224	0.84	-0.5
87,856	+		GFF1224	0.84	-0.2
87,857	-		GFF1224	0.84	-0.2
87,857	-		GFF1224	0.84	+0.5
87,866	-		GFF1224	0.88	+0.1
88,011	+		GFF1225	0.18	-0.1