Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1183

Experiment: Ying_OrganicAcid7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1182 and GFF1183 are separated by 120 nucleotidesGFF1183 and GFF1184 are separated by 77 nucleotides GFF1182 - putative transmembrane sensor, at 39,284 to 40,405 GFF1182 GFF1183 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 40,526 to 43,018 GFF1183 GFF1184 - hypothetical protein, at 43,096 to 44,622 GFF1184 Position (kb) 40 41 42 43 44Strain fitness (log2 ratio) -2 -1 0 1 2 3at 39.758 kb on + strand, within GFF1182at 39.986 kb on + strand, within GFF1182at 39.986 kb on + strand, within GFF1182at 39.986 kb on + strand, within GFF1182at 39.987 kb on - strand, within GFF1182at 40.253 kb on + strand, within GFF1182at 40.326 kb on + strandat 41.023 kb on - strand, within GFF1183at 41.118 kb on + strand, within GFF1183at 41.118 kb on + strand, within GFF1183at 41.118 kb on + strand, within GFF1183at 41.162 kb on + strand, within GFF1183at 41.163 kb on - strand, within GFF1183at 41.186 kb on + strand, within GFF1183at 41.186 kb on + strand, within GFF1183at 41.187 kb on - strand, within GFF1183at 41.187 kb on - strand, within GFF1183at 41.387 kb on + strand, within GFF1183at 41.388 kb on + strand, within GFF1183at 41.388 kb on - strand, within GFF1183at 41.388 kb on - strand, within GFF1183at 41.388 kb on - strand, within GFF1183at 41.388 kb on - strand, within GFF1183at 41.388 kb on - strand, within GFF1183at 41.519 kb on + strand, within GFF1183at 41.522 kb on + strand, within GFF1183at 41.523 kb on - strand, within GFF1183at 41.523 kb on - strand, within GFF1183at 41.597 kb on + strand, within GFF1183at 41.597 kb on + strand, within GFF1183at 41.598 kb on - strand, within GFF1183at 41.750 kb on + strand, within GFF1183at 41.751 kb on - strand, within GFF1183at 41.807 kb on + strand, within GFF1183at 41.897 kb on + strand, within GFF1183at 41.897 kb on + strand, within GFF1183at 41.898 kb on - strand, within GFF1183at 41.898 kb on - strand, within GFF1183at 41.899 kb on - strand, within GFF1183at 41.987 kb on + strand, within GFF1183at 42.135 kb on - strand, within GFF1183at 42.329 kb on + strand, within GFF1183at 42.329 kb on + strand, within GFF1183at 42.329 kb on + strand, within GFF1183at 42.330 kb on - strand, within GFF1183at 42.330 kb on - strand, within GFF1183at 42.509 kb on + strand, within GFF1183at 42.510 kb on - strand, within GFF1183at 42.513 kb on - strand, within GFF1183at 42.513 kb on - strand, within GFF1183at 42.515 kb on + strand, within GFF1183at 42.515 kb on + strand, within GFF1183at 42.515 kb on + strand, within GFF1183at 42.516 kb on - strand, within GFF1183at 42.516 kb on - strand, within GFF1183at 42.516 kb on - strand, within GFF1183at 42.516 kb on - strand, within GFF1183at 42.593 kb on + strand, within GFF1183at 42.594 kb on - strand, within GFF1183at 42.857 kb on + strandat 42.933 kb on - strandat 42.935 kb on + strandat 42.935 kb on + strandat 42.936 kb on - strandat 42.936 kb on - strandat 42.936 kb on - strandat 43.008 kb on - strandat 43.008 kb on - strandat 43.008 kb on - strandat 43.082 kb on - strandat 43.189 kb on + strandat 43.190 kb on - strandat 43.502 kb on - strand, within GFF1184at 43.525 kb on + strand, within GFF1184at 43.525 kb on + strand, within GFF1184at 43.526 kb on - strand, within GFF1184at 43.526 kb on - strand, within GFF1184at 43.526 kb on - strand, within GFF1184at 43.568 kb on - strand, within GFF1184at 43.568 kb on - strand, within GFF1184at 43.573 kb on + strand, within GFF1184at 43.573 kb on + strand, within GFF1184at 43.574 kb on - strand, within GFF1184at 43.574 kb on - strand, within GFF1184at 43.723 kb on + strand, within GFF1184at 43.798 kb on + strand, within GFF1184at 43.798 kb on + strand, within GFF1184at 43.798 kb on + strand, within GFF1184at 43.799 kb on - strand, within GFF1184at 43.799 kb on - strand, within GFF1184at 43.799 kb on - strand, within GFF1184at 43.799 kb on - strand, within GFF1184at 43.874 kb on - strand, within GFF1184at 43.961 kb on - strand, within GFF1184

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
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39,758 + GFF1182 0.42 +0.4
39,986 + GFF1182 0.63 -0.3
39,986 + GFF1182 0.63 -0.7
39,986 + GFF1182 0.63 -1.3
39,987 - GFF1182 0.63 -0.5
40,253 + GFF1182 0.86 -0.3
40,326 + +0.6
41,023 - GFF1183 0.20 -1.3
41,118 + GFF1183 0.24 +0.0
41,118 + GFF1183 0.24 -0.1
41,118 + GFF1183 0.24 +0.4
41,162 + GFF1183 0.26 -1.7
41,163 - GFF1183 0.26 +1.3
41,186 + GFF1183 0.26 +0.2
41,186 + GFF1183 0.26 -0.8
41,187 - GFF1183 0.27 +0.6
41,187 - GFF1183 0.27 -1.0
41,387 + GFF1183 0.35 -1.2
41,388 + GFF1183 0.35 +0.9
41,388 - GFF1183 0.35 -0.3
41,388 - GFF1183 0.35 -0.3
41,388 - GFF1183 0.35 +1.3
41,388 - GFF1183 0.35 -0.1
41,388 - GFF1183 0.35 -0.3
41,519 + GFF1183 0.40 +0.8
41,522 + GFF1183 0.40 -1.4
41,523 - GFF1183 0.40 +0.2
41,523 - GFF1183 0.40 -0.3
41,597 + GFF1183 0.43 +0.6
41,597 + GFF1183 0.43 +0.4
41,598 - GFF1183 0.43 +0.7
41,750 + GFF1183 0.49 -0.7
41,751 - GFF1183 0.49 -1.1
41,807 + GFF1183 0.51 +0.0
41,897 + GFF1183 0.55 +0.7
41,897 + GFF1183 0.55 +0.4
41,898 - GFF1183 0.55 +0.8
41,898 - GFF1183 0.55 -0.3
41,899 - GFF1183 0.55 -0.9
41,987 + GFF1183 0.59 -0.1
42,135 - GFF1183 0.65 -0.2
42,329 + GFF1183 0.72 +0.4
42,329 + GFF1183 0.72 -0.1
42,329 + GFF1183 0.72 -0.2
42,330 - GFF1183 0.72 +0.3
42,330 - GFF1183 0.72 +0.7
42,509 + GFF1183 0.80 +1.0
42,510 - GFF1183 0.80 +0.1
42,513 - GFF1183 0.80 -0.3
42,513 - GFF1183 0.80 +3.3
42,515 + GFF1183 0.80 +0.2
42,515 + GFF1183 0.80 +0.3
42,515 + GFF1183 0.80 -1.1
42,516 - GFF1183 0.80 -0.1
42,516 - GFF1183 0.80 -0.0
42,516 - GFF1183 0.80 +0.1
42,516 - GFF1183 0.80 +0.2
42,593 + GFF1183 0.83 +0.1
42,594 - GFF1183 0.83 -0.8
42,857 + +1.6
42,933 - +0.7
42,935 + +1.0
42,935 + +0.3
42,936 - +1.3
42,936 - -0.1
42,936 - +0.5
43,008 - -0.3
43,008 - +0.5
43,008 - +1.0
43,082 - +0.3
43,189 + -0.2
43,190 - +2.0
43,502 - GFF1184 0.27 +0.7
43,525 + GFF1184 0.28 +0.5
43,525 + GFF1184 0.28 +1.3
43,526 - GFF1184 0.28 -1.1
43,526 - GFF1184 0.28 -0.2
43,526 - GFF1184 0.28 -0.4
43,568 - GFF1184 0.31 +0.0
43,568 - GFF1184 0.31 +0.3
43,573 + GFF1184 0.31 +0.2
43,573 + GFF1184 0.31 -0.1
43,574 - GFF1184 0.31 +0.1
43,574 - GFF1184 0.31 -1.5
43,723 + GFF1184 0.41 +0.5
43,798 + GFF1184 0.46 +0.6
43,798 + GFF1184 0.46 +0.1
43,798 + GFF1184 0.46 +0.1
43,799 - GFF1184 0.46 -2.3
43,799 - GFF1184 0.46 -0.1
43,799 - GFF1184 0.46 +1.7
43,799 - GFF1184 0.46 +0.1
43,874 - GFF1184 0.51 +0.7
43,961 - GFF1184 0.57 +0.2

Or see this region's nucleotide sequence