Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1138

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
70,158	+		GFF1135	0.89	+0.6
70,159	-		GFF1135	0.89	-0.2
70,173	-				-0.8
70,268	-				-0.5
70,272	+				-1.1
70,272	+				-0.5
70,273	-				+1.0
70,293	+				-0.2
70,360	+				+0.0
70,360	+				-0.2
70,361	-				-0.1
70,367	-				+1.2
70,370	+				-0.1
70,370	+				-0.2
70,371	-				-0.4
70,371	-				+0.0
70,371	-				-0.1
70,417	+				+0.2
70,417	+				+1.2
70,417	+				-0.5
70,417	+				-0.8
70,417	+				+0.3
70,417	+				-0.1
70,417	+				-0.9
70,418	-				-0.0
70,418	-				-0.3
70,418	-				-0.8
70,418	-				+0.7
70,418	-				+0.7
70,421	+				-0.8
70,421	+				-0.3
70,421	+				+0.2
70,421	+				+0.5
70,421	+				-0.1
70,421	+				-0.2
70,421	+				-0.1
70,421	+				-0.1
70,421	+				-0.3
70,421	+				-0.6
70,421	+				+0.0
70,421	+				+0.1
70,421	+				+0.1
70,421	+				-0.3
70,421	+				+0.6
70,421	+				+0.3
70,421	+				+0.7
70,421	+				+0.1
70,421	+				+0.1
70,421	-				-0.9
70,422	-				-0.4
70,422	-				+0.2
70,422	-				+0.5
70,422	-				+0.0
70,422	-				-0.7
70,422	-				-0.3
70,422	-				+0.7
70,422	-				+0.7
70,422	-				-0.2
70,422	-				-0.3
70,422	-				-0.0
70,422	-				-0.7
70,422	-				-1.5
70,423	+				+0.1
70,423	+				+0.2
70,423	+				-0.4
70,423	+				-0.0
70,423	+				+0.2
70,423	+				-0.9
70,423	+				-0.6
70,423	+				+2.0
70,424	-				-0.3
70,424	-				+0.1
70,424	-				+0.2
70,424	-				-0.2
70,424	-				+0.0
70,424	-				-0.8
70,456	+				+0.2
70,456	+				+0.1
70,456	+				+0.9
70,456	+				+0.0
70,456	+				+0.0
70,456	+				+0.2
70,457	-				+1.2
70,457	-				+0.9
70,457	-				+1.0
70,457	-				-0.2
70,457	-				-0.2
71,142	-		GFF1138	0.19	-0.1
71,142	-		GFF1138	0.19	+0.6
71,208	+		GFF1138	0.41	-0.0
71,208	+		GFF1138	0.41	-0.6
71,208	+		GFF1138	0.41	-0.3
71,209	-		GFF1138	0.41	+0.7
71,209	-		GFF1138	0.41	-0.0
71,209	-		GFF1138	0.41	+2.9
71,209	-		GFF1138	0.41	-0.1
71,209	-		GFF1138	0.41	-0.6
71,223	+		GFF1138	0.46	+0.7
71,223	+		GFF1138	0.46	+5.2
71,223	+		GFF1138	0.46	-0.3
71,223	+		GFF1138	0.46	+0.6
71,223	+		GFF1138	0.46	-0.7
71,223	+		GFF1138	0.46	-0.1
71,224	-		GFF1138	0.46	-0.2
71,378	+				-0.6
71,378	+				+1.0
71,379	-				-0.4
71,379	-				-0.2
71,382	+				+1.7
71,382	+				-0.7
71,382	+				+0.7
71,382	+				-0.6
71,382	+				+1.9
71,383	-				-0.1
71,383	-				+0.5
71,393	-				-0.4
71,397	+				-0.8
71,398	-				-0.1
71,398	-				-0.0
71,398	-				-0.2
71,399	+				+0.7
71,399	+				+0.4
71,399	+				+0.1
71,399	+				+0.1
71,399	+				+0.2
71,400	-				-0.3
71,400	-				-1.2
71,400	-				-0.0
71,400	-				-0.4
71,400	-				-0.2
71,400	-				+1.4
71,400	-				-0.4
71,403	+				+1.2
71,404	-				-0.1
71,404	-				-0.8
71,460	-				-0.1
71,460	-				+0.3
71,460	-				-0.5
71,469	+				-0.0
71,469	+				+0.2
71,482	+				-0.1
71,483	-				-0.5
71,535	+				-0.2
71,535	+				+0.2
71,536	-				+1.1
71,536	-				-1.6
71,536	-				+0.6
71,536	-				-0.3
71,684	+				-0.3
71,690	+				+0.1
71,690	+				-1.3
71,690	+				+0.8
71,690	+				-0.3
71,690	+				+0.8
71,691	-				-0.6
71,691	-				+0.5
71,691	-				-1.9
71,697	+				+4.0
71,697	+				+0.0
71,698	-				+0.2
71,698	-				-0.3
71,756	+				+0.7
71,756	+				-0.5
71,756	+				+1.2
71,756	+				+0.5
71,756	+				-0.5
71,756	+				-0.1
71,756	+				-0.3
71,757	-				+0.5
71,757	-				-0.6
71,757	-				-0.3
71,757	-				-0.6
71,757	-				-0.6
71,820	+				-0.3
71,820	+				+0.5
71,820	+				+0.2
71,820	+				-0.2
71,820	+				+0.0
71,820	+				+1.2
71,821	-				-0.4
71,821	-				+0.1
71,821	-				+0.8
71,821	-				-0.2
71,821	-				-0.2
71,821	-				-0.9
71,821	-				+0.2
71,821	-				-1.1
71,828	+				-0.0
71,829	-				+0.0
71,866	+				+0.4
71,876	+				-0.5
71,877	-				-0.4
71,977	+				-0.0
71,977	+				-0.0
71,977	+				-0.4
71,978	-				-0.4
72,032	+				-1.3
72,032	+				+0.4
72,032	+				+0.3
72,032	+				+0.8
72,033	-				-0.1
72,033	-				+0.2
72,033	-				-0.3
72,033	-				-0.1
72,033	-				+0.6
72,036	+				-0.1
72,036	+				-0.3
72,036	+				+0.6
72,037	-				+0.1
72,037	-				-0.3
72,037	-				+0.1
72,037	-				-0.2
72,072	+				-2.7
72,073	-				-0.0
72,073	-				-0.6
72,111	+				+0.2
72,111	+				-0.3
72,111	+				-0.2
72,111	+				+0.3
72,112	-				-0.9
72,112	-				-0.6
72,149	+				+0.4
72,173	+				-1.6
72,173	+				-0.1
72,173	+				-0.4
72,173	+				-1.3
72,192	+				+0.7
72,193	-				+1.2
72,232	+				+0.2
72,232	+				+0.2
72,232	+				+0.4
72,233	-				-0.5
72,266	-				+0.1
72,266	-				-0.2
72,266	-				-0.7
72,291	+				+1.2
72,292	-				-0.3
72,372	+				+0.4
72,372	+				-0.6
72,373	-				+0.0