Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1108

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
33,804	+		GFF1107	0.89	+1.0
33,804	+		GFF1107	0.89	-0.1
33,805	-		GFF1107	0.89	-1.6
33,805	-		GFF1107	0.89	-0.7
33,805	-		GFF1107	0.89	-0.0
33,807	+		GFF1107	0.89	+0.0
33,838	-				-0.2
33,896	-				-0.5
33,951	-				+0.4
33,951	-				+0.8
33,951	-				-1.2
33,986	+				-0.7
33,986	+				+0.1
33,987	-				-2.1
33,987	-				-0.6
34,027	-				-0.0
34,041	+				-0.3
34,041	+				+0.2
34,059	+				-0.3
34,163	+				-0.8
34,164	-				+1.8
34,164	-				-0.0
34,183	-				+0.8
34,188	+				+0.0
34,189	-				+0.9
34,209	-				+0.4
34,209	-				+1.0
34,229	+				+0.9
34,238	+				-0.3
34,339	+				-0.2
34,339	+				-0.5
34,380	+				-0.5
34,381	-				-0.5
34,381	-				-0.0
34,453	-				-0.6
34,631	-				+1.0
34,729	-				-1.0
34,789	-				-1.9
34,789	-				+0.1
34,789	-				-0.6
34,903	+		GFF1108	0.11	+0.2
34,903	+		GFF1108	0.11	+0.1
34,904	-		GFF1108	0.11	-0.1
34,905	+		GFF1108	0.11	+0.3
34,905	+		GFF1108	0.11	-0.5
34,905	+		GFF1108	0.11	+0.2
34,905	+		GFF1108	0.11	+0.3
34,906	-		GFF1108	0.11	+0.4
34,906	-		GFF1108	0.11	+0.0
34,906	-		GFF1108	0.11	+0.5
34,906	-		GFF1108	0.11	+2.0
34,906	-		GFF1108	0.11	+0.2
34,906	-		GFF1108	0.11	+0.4
34,914	+		GFF1108	0.12	-0.2
34,914	+		GFF1108	0.12	+0.5
34,915	-		GFF1108	0.12	+0.2
34,986	+		GFF1108	0.19	-0.1
35,029	-		GFF1108	0.23	-0.8
35,118	+		GFF1108	0.32	-0.8
35,118	+		GFF1108	0.32	+0.2
35,119	-		GFF1108	0.32	+0.1
35,151	+		GFF1108	0.35	+0.4
35,151	-		GFF1108	0.35	+0.3
35,152	-		GFF1108	0.35	+0.1
35,170	-		GFF1108	0.37	-0.9
35,170	-		GFF1108	0.37	-0.0
35,211	+		GFF1108	0.41	-0.1
35,212	-		GFF1108	0.41	+0.1
35,212	-		GFF1108	0.41	+0.0
35,313	+		GFF1108	0.51	+2.6
35,314	-		GFF1108	0.51	-0.5
35,340	+		GFF1108	0.53	+0.0
35,340	+		GFF1108	0.53	+0.5
35,341	-		GFF1108	0.54	+0.1
35,341	-		GFF1108	0.54	-0.3
35,344	+		GFF1108	0.54	+0.6
35,344	+		GFF1108	0.54	+0.1
35,344	+		GFF1108	0.54	+0.3
35,344	+		GFF1108	0.54	+0.7
35,345	-		GFF1108	0.54	+0.3
35,776	+				-0.4
35,776	+				+0.3
35,777	-				+0.1
35,839	+				+0.7
35,840	-				-1.0
35,848	+				+0.1
35,905	-				+0.2
35,908	+				+0.5
35,908	+				+0.6
35,909	-				-1.2
35,998	-				+0.0
35,998	-				+0.2
35,998	-				+0.7
35,998	-				-0.6
35,998	-				+1.8
36,072	+				-0.1
36,106	-				-0.0
36,140	+				-0.3
36,140	+				+1.1
36,140	+				-0.5
36,141	-				+0.8
36,160	+				+0.7
36,160	+				+0.1
36,161	-				-0.5
36,191	-				-0.5
36,265	+				-0.3
36,266	-				-0.2
36,268	+				+0.1
36,268	+				+0.8
36,268	+				+0.2
36,268	+				+0.3
36,272	+				-0.0
36,272	+				+2.6
36,272	+				-0.1
36,273	-				-0.4
36,273	-				-0.2
36,273	-				-0.0
36,275	-				-0.2
36,357	+				-0.0
36,405	+				+0.1
36,406	-				-0.1
36,406	-				+0.4
36,555	+				+0.4
36,555	+				-0.9
36,555	+				+0.3
36,555	+				-1.6
36,556	-				+0.5
36,556	-				+0.1
36,556	-				+0.4
36,556	-				-0.6
36,556	-				-0.5
36,556	-				-1.1
36,623	-		GFF1109	0.12	-0.2
36,668	+		GFF1109	0.14	-0.2
36,676	+		GFF1109	0.14	+1.8
36,677	-		GFF1109	0.14	-0.0
36,690	-		GFF1109	0.15	+0.5
36,690	-		GFF1109	0.15	+0.0
36,777	-		GFF1109	0.19	+0.2
36,792	+		GFF1109	0.20	+0.9
36,792	+		GFF1109	0.20	+0.2
36,792	+		GFF1109	0.20	-0.0
36,792	+		GFF1109	0.20	+0.1
36,793	-		GFF1109	0.20	-0.4
36,793	-		GFF1109	0.20	-0.1
36,800	-		GFF1109	0.20	+0.7
36,800	-		GFF1109	0.20	-0.1