Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1019

Experiment: Ying_OrganicAcid7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1018 and GFF1019 are separated by 8 nucleotidesGFF1019 and GFF1020 are separated by 9 nucleotides GFF1018 - Aldehyde dehydrogenase A (EC 1.2.1.22), at 756,340 to 757,806 GFF1018 GFF1019 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 757,815 to 758,597 GFF1019 GFF1020 - TRAP transporter solute receptor, unknown substrate 3, at 758,607 to 759,659 GFF1020 Position (kb) 757 758 759Strain fitness (log2 ratio) -2 -1 0 1 2at 756.855 kb on + strand, within GFF1018at 756.856 kb on - strand, within GFF1018at 757.299 kb on + strand, within GFF1018at 757.335 kb on + strand, within GFF1018at 757.444 kb on + strand, within GFF1018at 757.445 kb on - strand, within GFF1018at 757.445 kb on - strand, within GFF1018at 757.466 kb on + strand, within GFF1018at 757.466 kb on + strand, within GFF1018at 757.470 kb on - strand, within GFF1018at 757.540 kb on + strand, within GFF1018at 757.541 kb on - strand, within GFF1018at 757.806 kb on + strandat 757.806 kb on + strandat 757.806 kb on + strandat 757.806 kb on + strandat 757.807 kb on - strandat 757.888 kb on + strandat 757.888 kb on + strandat 757.889 kb on - strandat 757.889 kb on - strandat 757.889 kb on - strandat 757.918 kb on - strand, within GFF1019at 758.027 kb on + strand, within GFF1019at 758.027 kb on + strand, within GFF1019at 758.028 kb on - strand, within GFF1019at 758.028 kb on - strand, within GFF1019at 758.028 kb on - strand, within GFF1019at 758.028 kb on - strand, within GFF1019at 758.028 kb on - strand, within GFF1019at 758.039 kb on + strand, within GFF1019at 758.107 kb on + strand, within GFF1019at 758.107 kb on + strand, within GFF1019at 758.107 kb on + strand, within GFF1019at 758.108 kb on - strand, within GFF1019at 758.108 kb on - strand, within GFF1019at 758.509 kb on + strand, within GFF1019at 758.509 kb on + strand, within GFF1019at 758.509 kb on + strand, within GFF1019at 758.509 kb on + strand, within GFF1019at 758.509 kb on + strand, within GFF1019at 758.509 kb on + strand, within GFF1019at 758.509 kb on + strand, within GFF1019at 758.509 kb on + strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.608 kb on + strandat 758.608 kb on + strandat 758.618 kb on + strandat 758.715 kb on + strand, within GFF1020at 758.715 kb on + strand, within GFF1020at 758.716 kb on - strand, within GFF1020at 758.716 kb on - strand, within GFF1020at 758.765 kb on + strand, within GFF1020at 758.905 kb on + strand, within GFF1020at 758.905 kb on + strand, within GFF1020at 758.906 kb on - strand, within GFF1020at 758.906 kb on - strand, within GFF1020at 758.945 kb on - strand, within GFF1020at 758.945 kb on - strand, within GFF1020at 758.988 kb on + strand, within GFF1020at 759.110 kb on - strand, within GFF1020at 759.125 kb on + strand, within GFF1020at 759.125 kb on + strand, within GFF1020at 759.125 kb on + strand, within GFF1020at 759.125 kb on + strand, within GFF1020at 759.126 kb on - strand, within GFF1020at 759.169 kb on + strand, within GFF1020at 759.170 kb on - strand, within GFF1020at 759.170 kb on - strand, within GFF1020at 759.215 kb on + strand, within GFF1020at 759.216 kb on - strand, within GFF1020at 759.296 kb on - strand, within GFF1020at 759.299 kb on + strand, within GFF1020at 759.300 kb on - strand, within GFF1020at 759.300 kb on - strand, within GFF1020at 759.418 kb on + strand, within GFF1020at 759.418 kb on + strand, within GFF1020at 759.418 kb on + strand, within GFF1020at 759.418 kb on + strand, within GFF1020at 759.510 kb on + strand, within GFF1020at 759.510 kb on + strand, within GFF1020at 759.510 kb on + strand, within GFF1020at 759.510 kb on + strand, within GFF1020at 759.510 kb on + strand, within GFF1020at 759.510 kb on + strand, within GFF1020at 759.510 kb on + strand, within GFF1020at 759.511 kb on - strand, within GFF1020at 759.511 kb on - strand, within GFF1020at 759.511 kb on - strand, within GFF1020at 759.511 kb on - strand, within GFF1020at 759.511 kb on - strand, within GFF1020at 759.511 kb on - strand, within GFF1020at 759.531 kb on + strand, within GFF1020at 759.531 kb on + strand, within GFF1020at 759.531 kb on + strand, within GFF1020at 759.531 kb on + strand, within GFF1020at 759.531 kb on + strand, within GFF1020at 759.532 kb on - strand, within GFF1020at 759.532 kb on - strand, within GFF1020at 759.532 kb on - strand, within GFF1020at 759.532 kb on - strand, within GFF1020at 759.532 kb on - strand, within GFF1020

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
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756,855 + GFF1018 0.35 -0.3
756,856 - GFF1018 0.35 -0.0
757,299 + GFF1018 0.65 -0.3
757,335 + GFF1018 0.68 -1.4
757,444 + GFF1018 0.75 -0.3
757,445 - GFF1018 0.75 -0.4
757,445 - GFF1018 0.75 +0.4
757,466 + GFF1018 0.77 +2.0
757,466 + GFF1018 0.77 -0.2
757,470 - GFF1018 0.77 -0.2
757,540 + GFF1018 0.82 +0.2
757,541 - GFF1018 0.82 +0.4
757,806 + +0.3
757,806 + -0.1
757,806 + -0.8
757,806 + -2.7
757,807 - +0.0
757,888 + +0.2
757,888 + +0.1
757,889 - -0.5
757,889 - +0.4
757,889 - +0.7
757,918 - GFF1019 0.13 +1.6
758,027 + GFF1019 0.27 -0.3
758,027 + GFF1019 0.27 +0.8
758,028 - GFF1019 0.27 +0.1
758,028 - GFF1019 0.27 +0.7
758,028 - GFF1019 0.27 -0.2
758,028 - GFF1019 0.27 -0.1
758,028 - GFF1019 0.27 -0.4
758,039 + GFF1019 0.29 +0.2
758,107 + GFF1019 0.37 +2.1
758,107 + GFF1019 0.37 +1.1
758,107 + GFF1019 0.37 +0.5
758,108 - GFF1019 0.37 -0.8
758,108 - GFF1019 0.37 +0.3
758,509 + GFF1019 0.89 +1.4
758,509 + GFF1019 0.89 -0.6
758,509 + GFF1019 0.89 +0.2
758,509 + GFF1019 0.89 +1.2
758,509 + GFF1019 0.89 -0.6
758,509 + GFF1019 0.89 +1.6
758,509 + GFF1019 0.89 +0.1
758,509 + GFF1019 0.89 -0.9
758,510 - GFF1019 0.89 +0.1
758,510 - GFF1019 0.89 -0.9
758,510 - GFF1019 0.89 -0.1
758,510 - GFF1019 0.89 +0.5
758,510 - GFF1019 0.89 -0.2
758,510 - GFF1019 0.89 +1.8
758,510 - GFF1019 0.89 +0.7
758,510 - GFF1019 0.89 -0.0
758,510 - GFF1019 0.89 +0.1
758,510 - GFF1019 0.89 -1.8
758,510 - GFF1019 0.89 -0.6
758,608 + +0.6
758,608 + +1.2
758,618 + +0.2
758,715 + GFF1020 0.10 +0.5
758,715 + GFF1020 0.10 +1.8
758,716 - GFF1020 0.10 -0.6
758,716 - GFF1020 0.10 +0.4
758,765 + GFF1020 0.15 +0.3
758,905 + GFF1020 0.28 -0.1
758,905 + GFF1020 0.28 -0.3
758,906 - GFF1020 0.28 -0.2
758,906 - GFF1020 0.28 +0.2
758,945 - GFF1020 0.32 +0.1
758,945 - GFF1020 0.32 -0.8
758,988 + GFF1020 0.36 -1.3
759,110 - GFF1020 0.48 -0.2
759,125 + GFF1020 0.49 -0.1
759,125 + GFF1020 0.49 +0.5
759,125 + GFF1020 0.49 -0.9
759,125 + GFF1020 0.49 -0.2
759,126 - GFF1020 0.49 +0.1
759,169 + GFF1020 0.53 +0.2
759,170 - GFF1020 0.53 -1.7
759,170 - GFF1020 0.53 +0.3
759,215 + GFF1020 0.58 +0.4
759,216 - GFF1020 0.58 +0.7
759,296 - GFF1020 0.65 -0.1
759,299 + GFF1020 0.66 -1.6
759,300 - GFF1020 0.66 +0.8
759,300 - GFF1020 0.66 +0.4
759,418 + GFF1020 0.77 +0.2
759,418 + GFF1020 0.77 +0.5
759,418 + GFF1020 0.77 -1.1
759,418 + GFF1020 0.77 -0.3
759,510 + GFF1020 0.86 +0.0
759,510 + GFF1020 0.86 -0.1
759,510 + GFF1020 0.86 +0.8
759,510 + GFF1020 0.86 -0.1
759,510 + GFF1020 0.86 +0.2
759,510 + GFF1020 0.86 +0.1
759,510 + GFF1020 0.86 -0.2
759,511 - GFF1020 0.86 +0.1
759,511 - GFF1020 0.86 -0.5
759,511 - GFF1020 0.86 -0.0
759,511 - GFF1020 0.86 -1.1
759,511 - GFF1020 0.86 -0.2
759,511 - GFF1020 0.86 -1.1
759,531 + GFF1020 0.88 +0.2
759,531 + GFF1020 0.88 -0.3
759,531 + GFF1020 0.88 -0.1
759,531 + GFF1020 0.88 +0.5
759,531 + GFF1020 0.88 -0.0
759,532 - GFF1020 0.88 -0.6
759,532 - GFF1020 0.88 +0.5
759,532 - GFF1020 0.88 +0.7
759,532 - GFF1020 0.88 +0.2
759,532 - GFF1020 0.88 -0.2

Or see this region's nucleotide sequence