Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF898 and GFF899 overlap by 4 nucleotides GFF899 and GFF900 are separated by 13 nucleotides
GFF898 - Acetyl-CoA acetyltransferase, at 627,189 to 628,370
GFF898
GFF899 - hypothetical protein, at 628,367 to 628,819
GFF899
GFF900 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 628,833 to 630,974
GFF900
Position (kb) 628
629 Strain fitness (log2 ratio) -1
0
1 at 627.378 kb on + strand, within GFF898 at 627.378 kb on + strand, within GFF898 at 627.379 kb on - strand, within GFF898 at 627.393 kb on - strand, within GFF898 at 627.402 kb on + strand, within GFF898 at 627.403 kb on - strand, within GFF898 at 627.403 kb on - strand, within GFF898 at 627.403 kb on - strand, within GFF898 at 627.639 kb on + strand, within GFF898 at 627.660 kb on + strand, within GFF898 at 627.661 kb on - strand, within GFF898 at 627.661 kb on - strand, within GFF898 at 627.751 kb on - strand, within GFF898 at 627.751 kb on - strand, within GFF898 at 627.816 kb on + strand, within GFF898 at 627.817 kb on + strand, within GFF898 at 627.817 kb on - strand, within GFF898 at 627.817 kb on - strand, within GFF898 at 627.946 kb on + strand, within GFF898 at 627.947 kb on - strand, within GFF898 at 628.008 kb on + strand, within GFF898 at 628.008 kb on + strand, within GFF898 at 628.056 kb on + strand, within GFF898 at 628.056 kb on + strand, within GFF898 at 628.056 kb on + strand, within GFF898 at 628.057 kb on - strand, within GFF898 at 628.057 kb on - strand, within GFF898 at 628.057 kb on - strand, within GFF898 at 628.057 kb on - strand, within GFF898 at 628.057 kb on - strand, within GFF898 at 628.057 kb on - strand, within GFF898 at 628.230 kb on + strand, within GFF898 at 628.231 kb on - strand, within GFF898 at 628.237 kb on - strand, within GFF898 at 628.329 kb on + strand at 628.329 kb on + strand at 628.329 kb on + strand at 628.330 kb on - strand at 628.330 kb on - strand at 628.427 kb on + strand, within GFF899 at 628.605 kb on - strand, within GFF899 at 628.658 kb on + strand, within GFF899 at 628.658 kb on + strand, within GFF899 at 628.805 kb on - strand at 628.969 kb on - strand at 628.987 kb on + strand at 628.990 kb on + strand at 628.991 kb on - strand at 629.307 kb on + strand, within GFF900 at 629.307 kb on + strand, within GFF900 at 629.407 kb on - strand, within GFF900 at 629.466 kb on + strand, within GFF900 at 629.467 kb on - strand, within GFF900 at 629.586 kb on + strand, within GFF900 at 629.587 kb on - strand, within GFF900
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 627,378 + GFF898 0.16 +0.5 627,378 + GFF898 0.16 +0.3 627,379 - GFF898 0.16 -0.1 627,393 - GFF898 0.17 +0.0 627,402 + GFF898 0.18 +1.3 627,403 - GFF898 0.18 +1.2 627,403 - GFF898 0.18 -1.3 627,403 - GFF898 0.18 -0.0 627,639 + GFF898 0.38 -0.1 627,660 + GFF898 0.40 +0.0 627,661 - GFF898 0.40 +0.7 627,661 - GFF898 0.40 +0.2 627,751 - GFF898 0.48 -0.2 627,751 - GFF898 0.48 -0.6 627,816 + GFF898 0.53 -0.1 627,817 + GFF898 0.53 +0.1 627,817 - GFF898 0.53 +0.7 627,817 - GFF898 0.53 +1.7 627,946 + GFF898 0.64 +0.8 627,947 - GFF898 0.64 -0.5 628,008 + GFF898 0.69 -0.0 628,008 + GFF898 0.69 +0.5 628,056 + GFF898 0.73 -0.3 628,056 + GFF898 0.73 +0.4 628,056 + GFF898 0.73 +0.6 628,057 - GFF898 0.73 -0.6 628,057 - GFF898 0.73 -1.2 628,057 - GFF898 0.73 +0.0 628,057 - GFF898 0.73 +0.5 628,057 - GFF898 0.73 -0.2 628,057 - GFF898 0.73 -0.8 628,230 + GFF898 0.88 -0.1 628,231 - GFF898 0.88 -0.1 628,237 - GFF898 0.89 -0.4 628,329 + -0.3 628,329 + +0.1 628,329 + +0.3 628,330 - +1.3 628,330 - -0.7 628,427 + GFF899 0.13 +0.3 628,605 - GFF899 0.53 -0.0 628,658 + GFF899 0.64 +0.3 628,658 + GFF899 0.64 +0.8 628,805 - -0.1 628,969 - +0.0 628,987 + -0.3 628,990 + +0.3 628,991 - -0.3 629,307 + GFF900 0.22 -0.1 629,307 + GFF900 0.22 +0.3 629,407 - GFF900 0.27 -0.3 629,466 + GFF900 0.30 +0.1 629,467 - GFF900 0.30 +1.1 629,586 + GFF900 0.35 -1.5 629,587 - GFF900 0.35 -0.5
Or see this region's nucleotide sequence