Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF763 and GFF764 are separated by 4 nucleotides GFF764 and GFF765 are separated by 10 nucleotides
GFF763 - bll0558; unknown protein, at 455,908 to 457,284
GFF763
GFF764 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2), at 457,289 to 458,404
GFF764
GFF765 - Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13), at 458,415 to 459,596
GFF765
Position (kb) 457
458
459 Strain fitness (log2 ratio) -1
0
1
2 at 456.380 kb on + strand, within GFF763 at 456.380 kb on + strand, within GFF763 at 456.380 kb on + strand, within GFF763 at 456.381 kb on - strand, within GFF763 at 456.914 kb on + strand, within GFF763 at 456.915 kb on - strand, within GFF763 at 456.915 kb on - strand, within GFF763 at 456.915 kb on - strand, within GFF763 at 456.915 kb on - strand, within GFF763 at 456.915 kb on - strand, within GFF763 at 457.392 kb on + strand at 457.393 kb on - strand at 457.407 kb on + strand, within GFF764 at 457.407 kb on + strand, within GFF764 at 457.408 kb on - strand, within GFF764 at 457.548 kb on + strand, within GFF764 at 457.548 kb on + strand, within GFF764 at 457.548 kb on + strand, within GFF764 at 457.549 kb on - strand, within GFF764 at 457.549 kb on - strand, within GFF764 at 457.549 kb on - strand, within GFF764 at 457.551 kb on + strand, within GFF764 at 457.551 kb on + strand, within GFF764 at 457.551 kb on + strand, within GFF764 at 457.551 kb on + strand, within GFF764 at 457.551 kb on + strand, within GFF764 at 457.552 kb on - strand, within GFF764 at 457.552 kb on - strand, within GFF764 at 457.552 kb on - strand, within GFF764 at 457.659 kb on + strand, within GFF764 at 457.659 kb on + strand, within GFF764 at 457.660 kb on - strand, within GFF764 at 458.241 kb on + strand, within GFF764 at 458.241 kb on + strand, within GFF764 at 458.242 kb on - strand, within GFF764 at 458.242 kb on - strand, within GFF764 at 458.242 kb on - strand, within GFF764 at 458.335 kb on - strand at 458.470 kb on + strand at 458.470 kb on + strand at 458.471 kb on - strand at 458.471 kb on - strand at 458.623 kb on + strand, within GFF765 at 458.623 kb on + strand, within GFF765 at 458.624 kb on - strand, within GFF765 at 458.890 kb on + strand, within GFF765 at 459.104 kb on - strand, within GFF765 at 459.145 kb on + strand, within GFF765 at 459.145 kb on + strand, within GFF765 at 459.145 kb on + strand, within GFF765 at 459.145 kb on + strand, within GFF765 at 459.146 kb on - strand, within GFF765 at 459.146 kb on - strand, within GFF765 at 459.146 kb on - strand, within GFF765 at 459.146 kb on - strand, within GFF765 at 459.214 kb on + strand, within GFF765
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 456,380 + GFF763 0.34 -0.2 456,380 + GFF763 0.34 -0.2 456,380 + GFF763 0.34 -1.1 456,381 - GFF763 0.34 +0.4 456,914 + GFF763 0.73 -0.0 456,915 - GFF763 0.73 +0.1 456,915 - GFF763 0.73 -0.0 456,915 - GFF763 0.73 -0.3 456,915 - GFF763 0.73 +1.8 456,915 - GFF763 0.73 +0.8 457,392 + +0.1 457,393 - +0.6 457,407 + GFF764 0.11 +0.0 457,407 + GFF764 0.11 +0.2 457,408 - GFF764 0.11 -0.6 457,548 + GFF764 0.23 +1.0 457,548 + GFF764 0.23 +1.0 457,548 + GFF764 0.23 +0.7 457,549 - GFF764 0.23 -0.6 457,549 - GFF764 0.23 +0.1 457,549 - GFF764 0.23 +0.1 457,551 + GFF764 0.23 -1.5 457,551 + GFF764 0.23 +1.0 457,551 + GFF764 0.23 +0.2 457,551 + GFF764 0.23 +0.3 457,551 + GFF764 0.23 -0.3 457,552 - GFF764 0.24 -0.1 457,552 - GFF764 0.24 -0.5 457,552 - GFF764 0.24 +1.4 457,659 + GFF764 0.33 -0.8 457,659 + GFF764 0.33 -0.1 457,660 - GFF764 0.33 +0.0 458,241 + GFF764 0.85 -1.0 458,241 + GFF764 0.85 -0.1 458,242 - GFF764 0.85 +0.4 458,242 - GFF764 0.85 -0.0 458,242 - GFF764 0.85 -1.3 458,335 - +0.0 458,470 + +1.0 458,470 + +0.0 458,471 - +0.0 458,471 - +0.4 458,623 + GFF765 0.18 -1.2 458,623 + GFF765 0.18 +0.6 458,624 - GFF765 0.18 +0.0 458,890 + GFF765 0.40 +0.6 459,104 - GFF765 0.58 -0.2 459,145 + GFF765 0.62 +0.4 459,145 + GFF765 0.62 -0.0 459,145 + GFF765 0.62 +0.1 459,145 + GFF765 0.62 -0.2 459,146 - GFF765 0.62 +0.9 459,146 - GFF765 0.62 +0.1 459,146 - GFF765 0.62 -0.6 459,146 - GFF765 0.62 +0.2 459,214 + GFF765 0.68 +0.6
Or see this region's nucleotide sequence