Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF755 and GFF756 are separated by 119 nucleotides GFF756 and GFF757 are separated by 27 nucleotides
GFF755 - Permease of the drug/metabolite transporter (DMT) superfamily, at 445,534 to 446,475
GFF755
GFF756 - Quinone oxidoreductase (EC 1.6.5.5), at 446,595 to 447,590
GFF756
GFF757 - Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase, at 447,618 to 448,766
GFF757
Position (kb) 446
447
448 Strain fitness (log2 ratio) -2
-1
0
1
2 at 445.716 kb on - strand, within GFF755 at 445.716 kb on - strand, within GFF755 at 445.745 kb on + strand, within GFF755 at 445.745 kb on + strand, within GFF755 at 445.746 kb on - strand, within GFF755 at 445.746 kb on - strand, within GFF755 at 445.746 kb on - strand, within GFF755 at 445.746 kb on - strand, within GFF755 at 445.949 kb on + strand, within GFF755 at 445.950 kb on - strand, within GFF755 at 446.108 kb on + strand, within GFF755 at 446.198 kb on + strand, within GFF755 at 446.199 kb on - strand, within GFF755 at 446.199 kb on - strand, within GFF755 at 446.199 kb on - strand, within GFF755 at 446.213 kb on + strand, within GFF755 at 446.213 kb on + strand, within GFF755 at 446.213 kb on + strand, within GFF755 at 446.214 kb on - strand, within GFF755 at 446.214 kb on - strand, within GFF755 at 446.488 kb on - strand at 446.743 kb on - strand, within GFF756 at 446.743 kb on - strand, within GFF756 at 446.743 kb on - strand, within GFF756 at 446.761 kb on - strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.887 kb on - strand, within GFF756 at 446.887 kb on - strand, within GFF756 at 447.186 kb on + strand, within GFF756 at 447.186 kb on + strand, within GFF756 at 447.252 kb on + strand, within GFF756 at 447.253 kb on - strand, within GFF756 at 447.253 kb on - strand, within GFF756 at 447.253 kb on - strand, within GFF756 at 447.390 kb on + strand, within GFF756 at 447.390 kb on + strand, within GFF756 at 447.390 kb on + strand, within GFF756 at 447.390 kb on + strand, within GFF756 at 447.390 kb on + strand, within GFF756 at 447.391 kb on - strand, within GFF756 at 447.391 kb on - strand, within GFF756 at 447.391 kb on - strand, within GFF756 at 447.391 kb on - strand, within GFF756 at 447.523 kb on - strand at 447.961 kb on + strand, within GFF757 at 447.962 kb on - strand, within GFF757 at 447.962 kb on - strand, within GFF757 at 448.028 kb on - strand, within GFF757 at 448.048 kb on + strand, within GFF757 at 448.048 kb on + strand, within GFF757 at 448.049 kb on - strand, within GFF757 at 448.049 kb on - strand, within GFF757 at 448.049 kb on - strand, within GFF757 at 448.306 kb on + strand, within GFF757 at 448.306 kb on + strand, within GFF757 at 448.307 kb on - strand, within GFF757 at 448.511 kb on - strand, within GFF757 at 448.511 kb on - strand, within GFF757 at 448.574 kb on - strand, within GFF757
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 445,716 - GFF755 0.19 -1.1 445,716 - GFF755 0.19 +0.4 445,745 + GFF755 0.22 -0.3 445,745 + GFF755 0.22 -0.1 445,746 - GFF755 0.23 +0.4 445,746 - GFF755 0.23 +1.4 445,746 - GFF755 0.23 -0.2 445,746 - GFF755 0.23 +0.1 445,949 + GFF755 0.44 +0.7 445,950 - GFF755 0.44 +0.1 446,108 + GFF755 0.61 +2.4 446,198 + GFF755 0.70 +0.0 446,199 - GFF755 0.71 -0.0 446,199 - GFF755 0.71 -0.6 446,199 - GFF755 0.71 -0.2 446,213 + GFF755 0.72 -0.1 446,213 + GFF755 0.72 +0.1 446,213 + GFF755 0.72 -0.2 446,214 - GFF755 0.72 +0.0 446,214 - GFF755 0.72 -0.3 446,488 - -0.8 446,743 - GFF756 0.15 +0.2 446,743 - GFF756 0.15 +0.2 446,743 - GFF756 0.15 -0.5 446,761 - GFF756 0.17 -1.3 446,886 + GFF756 0.29 +0.7 446,886 + GFF756 0.29 +0.2 446,886 + GFF756 0.29 -0.8 446,886 + GFF756 0.29 -0.7 446,886 + GFF756 0.29 +0.5 446,886 + GFF756 0.29 -0.7 446,886 + GFF756 0.29 +0.7 446,887 - GFF756 0.29 +0.0 446,887 - GFF756 0.29 -1.0 447,186 + GFF756 0.59 -0.2 447,186 + GFF756 0.59 -0.6 447,252 + GFF756 0.66 -0.5 447,253 - GFF756 0.66 -0.6 447,253 - GFF756 0.66 -0.0 447,253 - GFF756 0.66 +0.8 447,390 + GFF756 0.80 +0.4 447,390 + GFF756 0.80 +0.5 447,390 + GFF756 0.80 -0.5 447,390 + GFF756 0.80 -0.4 447,390 + GFF756 0.80 -0.8 447,391 - GFF756 0.80 -1.6 447,391 - GFF756 0.80 +0.9 447,391 - GFF756 0.80 -0.2 447,391 - GFF756 0.80 -0.3 447,523 - -2.0 447,961 + GFF757 0.30 -0.6 447,962 - GFF757 0.30 +0.2 447,962 - GFF757 0.30 +0.4 448,028 - GFF757 0.36 -0.4 448,048 + GFF757 0.37 +1.0 448,048 + GFF757 0.37 -0.8 448,049 - GFF757 0.38 +0.0 448,049 - GFF757 0.38 -0.2 448,049 - GFF757 0.38 -0.5 448,306 + GFF757 0.60 +1.1 448,306 + GFF757 0.60 -1.0 448,307 - GFF757 0.60 +0.8 448,511 - GFF757 0.78 +0.0 448,511 - GFF757 0.78 -0.2 448,574 - GFF757 0.83 +0.2
Or see this region's nucleotide sequence