Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF734 and GFF735 overlap by 4 nucleotides GFF735 and GFF736 are separated by 45 nucleotides
GFF734 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 413,163 to 415,322
GFF734
GFF735 - Large extracellular alpha-helical protein, at 415,319 to 421,270
GFF735
GFF736 - Argininosuccinate lyase (EC 4.3.2.1), at 421,316 to 422,767
GFF736
Position (kb) 415
416
417
418
419
420
421
422 Strain fitness (log2 ratio) -2
-1
0
1
2 at 414.833 kb on - strand, within GFF734 at 414.833 kb on - strand, within GFF734 at 415.381 kb on - strand at 415.381 kb on - strand at 415.444 kb on - strand at 415.473 kb on + strand at 415.479 kb on + strand at 415.479 kb on + strand at 415.479 kb on + strand at 415.479 kb on + strand at 415.480 kb on - strand at 415.483 kb on - strand at 415.746 kb on + strand at 415.747 kb on - strand at 416.241 kb on + strand, within GFF735 at 416.477 kb on + strand, within GFF735 at 416.478 kb on - strand, within GFF735 at 416.691 kb on + strand, within GFF735 at 416.692 kb on - strand, within GFF735 at 416.719 kb on - strand, within GFF735 at 417.280 kb on + strand, within GFF735 at 417.516 kb on + strand, within GFF735 at 417.517 kb on - strand, within GFF735 at 417.732 kb on + strand, within GFF735 at 417.855 kb on + strand, within GFF735 at 417.855 kb on + strand, within GFF735 at 417.856 kb on - strand, within GFF735 at 417.906 kb on + strand, within GFF735 at 417.907 kb on - strand, within GFF735 at 417.927 kb on + strand, within GFF735 at 417.928 kb on - strand, within GFF735 at 417.976 kb on - strand, within GFF735 at 417.976 kb on - strand, within GFF735 at 417.976 kb on - strand, within GFF735 at 418.389 kb on + strand, within GFF735 at 418.395 kb on + strand, within GFF735 at 418.395 kb on + strand, within GFF735 at 418.395 kb on + strand, within GFF735 at 418.396 kb on - strand, within GFF735 at 418.396 kb on - strand, within GFF735 at 418.396 kb on - strand, within GFF735 at 418.396 kb on - strand, within GFF735 at 418.627 kb on - strand, within GFF735 at 418.627 kb on - strand, within GFF735 at 418.627 kb on - strand, within GFF735 at 418.911 kb on + strand, within GFF735 at 418.912 kb on - strand, within GFF735 at 418.912 kb on - strand, within GFF735 at 419.034 kb on + strand, within GFF735 at 419.034 kb on + strand, within GFF735 at 419.451 kb on + strand, within GFF735 at 419.451 kb on + strand, within GFF735 at 419.451 kb on + strand, within GFF735 at 419.700 kb on + strand, within GFF735 at 419.700 kb on + strand, within GFF735 at 419.700 kb on + strand, within GFF735 at 419.700 kb on + strand, within GFF735 at 419.701 kb on - strand, within GFF735 at 419.701 kb on - strand, within GFF735 at 420.594 kb on + strand, within GFF735 at 420.595 kb on - strand, within GFF735 at 420.651 kb on + strand, within GFF735 at 420.651 kb on + strand, within GFF735 at 420.651 kb on + strand, within GFF735 at 420.652 kb on - strand, within GFF735 at 421.287 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 414,833 - GFF734 0.77 +0.3 414,833 - GFF734 0.77 +0.2 415,381 - +0.6 415,381 - -0.2 415,444 - +0.1 415,473 + -0.4 415,479 + +1.0 415,479 + -0.1 415,479 + -0.2 415,479 + +0.1 415,480 - -0.2 415,483 - -0.2 415,746 + +0.5 415,747 - -0.8 416,241 + GFF735 0.15 +0.4 416,477 + GFF735 0.19 +0.3 416,478 - GFF735 0.19 +0.3 416,691 + GFF735 0.23 -0.3 416,692 - GFF735 0.23 -0.1 416,719 - GFF735 0.24 -0.0 417,280 + GFF735 0.33 -0.1 417,516 + GFF735 0.37 -0.1 417,517 - GFF735 0.37 -1.7 417,732 + GFF735 0.41 +0.4 417,855 + GFF735 0.43 -0.1 417,855 + GFF735 0.43 -0.0 417,856 - GFF735 0.43 -0.1 417,906 + GFF735 0.43 -0.2 417,907 - GFF735 0.43 -0.3 417,927 + GFF735 0.44 -0.2 417,928 - GFF735 0.44 +0.4 417,976 - GFF735 0.45 +0.4 417,976 - GFF735 0.45 -0.2 417,976 - GFF735 0.45 -1.4 418,389 + GFF735 0.52 -0.1 418,395 + GFF735 0.52 +0.1 418,395 + GFF735 0.52 +0.1 418,395 + GFF735 0.52 +2.4 418,396 - GFF735 0.52 +0.2 418,396 - GFF735 0.52 +0.4 418,396 - GFF735 0.52 -0.3 418,396 - GFF735 0.52 -0.3 418,627 - GFF735 0.56 +0.3 418,627 - GFF735 0.56 -0.4 418,627 - GFF735 0.56 +0.6 418,911 + GFF735 0.60 +0.7 418,912 - GFF735 0.60 +0.4 418,912 - GFF735 0.60 +0.2 419,034 + GFF735 0.62 +1.1 419,034 + GFF735 0.62 +1.2 419,451 + GFF735 0.69 +0.4 419,451 + GFF735 0.69 -0.2 419,451 + GFF735 0.69 -0.1 419,700 + GFF735 0.74 +0.3 419,700 + GFF735 0.74 -0.3 419,700 + GFF735 0.74 -0.2 419,700 + GFF735 0.74 -0.7 419,701 - GFF735 0.74 +0.6 419,701 - GFF735 0.74 +0.1 420,594 + GFF735 0.89 +1.4 420,595 - GFF735 0.89 -0.3 420,651 + GFF735 0.90 -0.2 420,651 + GFF735 0.90 +0.7 420,651 + GFF735 0.90 -1.8 420,652 - GFF735 0.90 +1.0 421,287 - +0.9
Or see this region's nucleotide sequence