Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF723 and GFF724 are separated by 41 nucleotides GFF724 and GFF725 are separated by 120 nucleotides GFF725 and GFF726 are separated by 9 nucleotides
GFF723 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 403,043 to 404,110
GFF723
GFF724 - Ornithine cyclodeaminase (EC 4.3.1.12), at 404,152 to 405,231
GFF724
GFF725 - Transcriptional regulator, AsnC family, at 405,352 to 405,777
GFF725
GFF726 - Enoyl-CoA hydratase (EC 4.2.1.17), at 405,787 to 406,629
GFF726
Position (kb) 404
405
406 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 403.401 kb on + strand, within GFF723 at 403.488 kb on + strand, within GFF723 at 403.489 kb on - strand, within GFF723 at 403.489 kb on - strand, within GFF723 at 403.489 kb on - strand, within GFF723 at 403.892 kb on + strand, within GFF723 at 403.892 kb on + strand, within GFF723 at 403.893 kb on - strand, within GFF723 at 403.893 kb on - strand, within GFF723 at 403.893 kb on - strand, within GFF723 at 403.897 kb on - strand, within GFF723 at 404.135 kb on + strand at 404.303 kb on + strand, within GFF724 at 404.303 kb on + strand, within GFF724 at 404.304 kb on - strand, within GFF724 at 404.304 kb on - strand, within GFF724 at 404.996 kb on + strand, within GFF724 at 404.996 kb on + strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 405.008 kb on + strand, within GFF724 at 405.009 kb on - strand, within GFF724 at 405.009 kb on - strand, within GFF724 at 405.105 kb on - strand, within GFF724 at 405.280 kb on + strand at 405.280 kb on + strand at 405.763 kb on + strand at 405.764 kb on - strand at 405.775 kb on + strand at 406.075 kb on + strand, within GFF726 at 406.075 kb on + strand, within GFF726 at 406.076 kb on + strand, within GFF726 at 406.076 kb on + strand, within GFF726 at 406.076 kb on + strand, within GFF726 at 406.077 kb on - strand, within GFF726 at 406.077 kb on - strand, within GFF726
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 403,401 + GFF723 0.34 +0.8 403,488 + GFF723 0.42 -0.2 403,489 - GFF723 0.42 -0.2 403,489 - GFF723 0.42 -0.2 403,489 - GFF723 0.42 +0.0 403,892 + GFF723 0.79 -0.5 403,892 + GFF723 0.79 -0.1 403,893 - GFF723 0.80 -0.4 403,893 - GFF723 0.80 +0.2 403,893 - GFF723 0.80 +0.7 403,897 - GFF723 0.80 -0.8 404,135 + +0.1 404,303 + GFF724 0.14 -1.4 404,303 + GFF724 0.14 -1.1 404,304 - GFF724 0.14 -1.6 404,304 - GFF724 0.14 -0.6 404,996 + GFF724 0.78 -1.8 404,996 + GFF724 0.78 -3.3 404,997 - GFF724 0.78 -4.3 404,997 - GFF724 0.78 -1.4 404,997 - GFF724 0.78 -1.6 404,997 - GFF724 0.78 -2.3 404,997 - GFF724 0.78 -1.8 405,008 + GFF724 0.79 -1.0 405,009 - GFF724 0.79 -0.8 405,009 - GFF724 0.79 -3.0 405,105 - GFF724 0.88 -0.9 405,280 + -2.9 405,280 + -3.5 405,763 + -3.0 405,764 - +0.0 405,775 + +0.4 406,075 + GFF726 0.34 +0.2 406,075 + GFF726 0.34 -0.3 406,076 + GFF726 0.34 -0.4 406,076 + GFF726 0.34 +0.6 406,076 + GFF726 0.34 -0.3 406,077 - GFF726 0.34 +1.8 406,077 - GFF726 0.34 +0.4
Or see this region's nucleotide sequence