Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF668 and GFF669 are separated by 130 nucleotides GFF669 and GFF670 are separated by 3 nucleotides GFF670 and GFF671 are separated by 7 nucleotides
GFF668 - Transcriptional regulator, LysR family, at 350,147 to 351,118
GFF668
GFF669 - FMN-dependent NADH-azoreductase, at 351,249 to 351,893
GFF669
GFF670 - putative exported protein, at 351,897 to 356,024
GFF670
GFF671 - Surface antigen (D15) precursor, at 356,032 to 358,053
GFF671
Position (kb) 351
352
353
354
355
356
357 Strain fitness (log2 ratio) -2
-1
0
1 at 350.925 kb on + strand, within GFF668 at 350.925 kb on + strand, within GFF668 at 350.926 kb on - strand, within GFF668 at 351.154 kb on + strand at 351.154 kb on + strand at 351.175 kb on + strand at 351.175 kb on - strand at 351.176 kb on - strand at 351.204 kb on + strand at 351.204 kb on + strand at 351.205 kb on - strand at 351.205 kb on - strand at 351.205 kb on - strand at 351.205 kb on - strand at 351.246 kb on + strand at 351.531 kb on + strand, within GFF669 at 351.531 kb on + strand, within GFF669 at 351.531 kb on + strand, within GFF669 at 351.531 kb on + strand, within GFF669 at 351.532 kb on - strand, within GFF669 at 351.532 kb on - strand, within GFF669 at 351.532 kb on - strand, within GFF669 at 351.532 kb on - strand, within GFF669 at 351.603 kb on + strand, within GFF669 at 351.603 kb on + strand, within GFF669 at 351.603 kb on + strand, within GFF669 at 351.604 kb on - strand, within GFF669 at 351.604 kb on - strand, within GFF669 at 351.675 kb on + strand, within GFF669 at 351.675 kb on + strand, within GFF669 at 351.675 kb on + strand, within GFF669 at 351.676 kb on - strand, within GFF669 at 351.720 kb on + strand, within GFF669 at 351.720 kb on + strand, within GFF669 at 351.720 kb on + strand, within GFF669 at 351.720 kb on + strand, within GFF669 at 351.721 kb on - strand, within GFF669 at 351.721 kb on - strand, within GFF669 at 351.982 kb on + strand at 351.982 kb on + strand at 351.982 kb on + strand at 351.982 kb on + strand at 351.982 kb on + strand at 351.982 kb on + strand at 351.983 kb on - strand at 351.983 kb on - strand at 352.028 kb on - strand at 352.036 kb on + strand at 352.036 kb on + strand at 352.036 kb on + strand at 352.037 kb on - strand at 352.037 kb on - strand at 352.400 kb on - strand, within GFF670 at 352.460 kb on - strand, within GFF670 at 352.546 kb on + strand, within GFF670 at 352.546 kb on + strand, within GFF670 at 352.546 kb on + strand, within GFF670 at 352.855 kb on + strand, within GFF670 at 352.855 kb on + strand, within GFF670 at 352.856 kb on - strand, within GFF670 at 352.856 kb on - strand, within GFF670 at 353.231 kb on - strand, within GFF670 at 355.480 kb on + strand, within GFF670 at 356.087 kb on + strand at 356.087 kb on + strand at 356.088 kb on - strand at 356.126 kb on + strand at 356.280 kb on - strand, within GFF671 at 356.534 kb on + strand, within GFF671 at 356.534 kb on + strand, within GFF671 at 356.591 kb on + strand, within GFF671 at 356.591 kb on + strand, within GFF671 at 356.592 kb on - strand, within GFF671 at 356.592 kb on - strand, within GFF671 at 356.622 kb on - strand, within GFF671 at 356.672 kb on + strand, within GFF671 at 356.672 kb on + strand, within GFF671 at 356.672 kb on + strand, within GFF671 at 356.672 kb on + strand, within GFF671 at 356.673 kb on - strand, within GFF671 at 356.751 kb on - strand, within GFF671 at 356.759 kb on - strand, within GFF671 at 356.760 kb on - strand, within GFF671 at 356.775 kb on - strand, within GFF671
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 350,925 + GFF668 0.80 +0.3 350,925 + GFF668 0.80 -0.2 350,926 - GFF668 0.80 +0.2 351,154 + -0.4 351,154 + -0.4 351,175 + +0.2 351,175 - +0.3 351,176 - +1.1 351,204 + +0.2 351,204 + -0.1 351,205 - +0.3 351,205 - +1.0 351,205 - +1.1 351,205 - +0.3 351,246 + +0.6 351,531 + GFF669 0.44 -0.5 351,531 + GFF669 0.44 -0.0 351,531 + GFF669 0.44 +0.2 351,531 + GFF669 0.44 +0.1 351,532 - GFF669 0.44 -0.1 351,532 - GFF669 0.44 -0.8 351,532 - GFF669 0.44 +0.4 351,532 - GFF669 0.44 -0.6 351,603 + GFF669 0.55 -0.0 351,603 + GFF669 0.55 -0.1 351,603 + GFF669 0.55 +0.3 351,604 - GFF669 0.55 +0.8 351,604 - GFF669 0.55 +1.4 351,675 + GFF669 0.66 -0.0 351,675 + GFF669 0.66 +1.1 351,675 + GFF669 0.66 -0.9 351,676 - GFF669 0.66 -0.6 351,720 + GFF669 0.73 -0.2 351,720 + GFF669 0.73 +0.4 351,720 + GFF669 0.73 -0.2 351,720 + GFF669 0.73 -0.4 351,721 - GFF669 0.73 +1.1 351,721 - GFF669 0.73 -0.2 351,982 + -0.2 351,982 + -0.9 351,982 + +0.1 351,982 + +0.1 351,982 + -0.6 351,982 + -1.2 351,983 - -1.5 351,983 - -1.7 352,028 - -0.4 352,036 + -1.0 352,036 + -0.1 352,036 + -0.8 352,037 - -0.9 352,037 - -0.3 352,400 - GFF670 0.12 -0.6 352,460 - GFF670 0.14 -0.0 352,546 + GFF670 0.16 -0.3 352,546 + GFF670 0.16 +0.2 352,546 + GFF670 0.16 -0.2 352,855 + GFF670 0.23 +0.8 352,855 + GFF670 0.23 -0.8 352,856 - GFF670 0.23 -0.0 352,856 - GFF670 0.23 -0.2 353,231 - GFF670 0.32 -0.2 355,480 + GFF670 0.87 -0.8 356,087 + +0.6 356,087 + -1.8 356,088 - -0.2 356,126 + -0.6 356,280 - GFF671 0.12 +0.4 356,534 + GFF671 0.25 -0.7 356,534 + GFF671 0.25 +1.2 356,591 + GFF671 0.28 +0.0 356,591 + GFF671 0.28 +0.2 356,592 - GFF671 0.28 -0.2 356,592 - GFF671 0.28 -1.4 356,622 - GFF671 0.29 -0.5 356,672 + GFF671 0.32 +1.7 356,672 + GFF671 0.32 -0.2 356,672 + GFF671 0.32 +0.2 356,672 + GFF671 0.32 -0.6 356,673 - GFF671 0.32 +0.1 356,751 - GFF671 0.36 +0.1 356,759 - GFF671 0.36 +0.1 356,760 - GFF671 0.36 +0.8 356,775 - GFF671 0.37 -0.1
Or see this region's nucleotide sequence