Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF656

Experiment: Ying_OrganicAcid7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF655 and GFF656 are separated by 241 nucleotidesGFF656 and GFF657 are separated by 28 nucleotides GFF655 - Sigma-54 activated regulatory protein, at 335,162 to 336,391 GFF655 GFF656 - Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8), at 336,633 to 338,771 GFF656 GFF657 - Probable tonB-dependent receptor yncD precursor, at 338,800 to 340,893 GFF657 Position (kb) 336 337 338 339Strain fitness (log2 ratio) -2 -1 0 1at 335.754 kb on + strand, within GFF655at 335.754 kb on + strand, within GFF655at 335.754 kb on + strand, within GFF655at 335.754 kb on + strand, within GFF655at 335.754 kb on + strand, within GFF655at 335.755 kb on - strand, within GFF655at 336.832 kb on - strandat 336.832 kb on - strandat 336.918 kb on + strand, within GFF656at 336.918 kb on + strand, within GFF656at 336.919 kb on - strand, within GFF656at 336.978 kb on + strand, within GFF656at 336.978 kb on + strand, within GFF656at 336.978 kb on + strand, within GFF656at 336.978 kb on + strand, within GFF656at 336.978 kb on + strand, within GFF656at 336.978 kb on + strand, within GFF656at 336.978 kb on + strand, within GFF656at 336.978 kb on + strand, within GFF656at 336.979 kb on - strand, within GFF656at 336.979 kb on - strand, within GFF656at 336.979 kb on - strand, within GFF656at 337.227 kb on + strand, within GFF656at 337.228 kb on - strand, within GFF656at 337.228 kb on - strand, within GFF656at 337.308 kb on + strand, within GFF656at 337.309 kb on - strand, within GFF656at 337.320 kb on + strand, within GFF656at 337.509 kb on + strand, within GFF656at 337.509 kb on + strand, within GFF656at 337.509 kb on + strand, within GFF656at 337.509 kb on + strand, within GFF656at 337.509 kb on + strand, within GFF656at 337.510 kb on - strand, within GFF656at 337.510 kb on - strand, within GFF656at 337.510 kb on - strand, within GFF656at 337.510 kb on - strand, within GFF656at 337.579 kb on - strand, within GFF656at 337.579 kb on - strand, within GFF656at 337.620 kb on + strand, within GFF656at 337.621 kb on - strand, within GFF656at 337.621 kb on - strand, within GFF656at 337.633 kb on - strand, within GFF656at 337.828 kb on - strand, within GFF656at 337.935 kb on + strand, within GFF656at 337.936 kb on - strand, within GFF656at 337.959 kb on + strand, within GFF656at 338.162 kb on + strand, within GFF656at 338.244 kb on + strand, within GFF656at 338.245 kb on - strand, within GFF656at 338.316 kb on + strand, within GFF656at 338.317 kb on - strand, within GFF656at 338.317 kb on - strand, within GFF656at 338.317 kb on - strand, within GFF656at 338.317 kb on - strand, within GFF656at 338.337 kb on + strand, within GFF656at 338.337 kb on + strand, within GFF656at 338.337 kb on + strand, within GFF656at 338.337 kb on + strand, within GFF656at 338.337 kb on + strand, within GFF656at 338.337 kb on + strand, within GFF656at 338.337 kb on + strand, within GFF656at 338.338 kb on - strand, within GFF656at 338.338 kb on - strand, within GFF656at 338.338 kb on - strand, within GFF656at 338.338 kb on - strand, within GFF656at 338.338 kb on - strand, within GFF656at 338.371 kb on - strand, within GFF656at 338.418 kb on + strand, within GFF656at 338.419 kb on - strand, within GFF656at 338.419 kb on - strand, within GFF656at 338.419 kb on - strand, within GFF656at 338.466 kb on + strand, within GFF656at 338.466 kb on + strand, within GFF656at 338.466 kb on + strand, within GFF656at 338.467 kb on - strand, within GFF656at 338.607 kb on + strandat 338.608 kb on - strandat 338.608 kb on - strandat 339.019 kb on + strand, within GFF657at 339.020 kb on - strand, within GFF657at 339.094 kb on + strand, within GFF657at 339.094 kb on + strand, within GFF657at 339.094 kb on + strand, within GFF657at 339.095 kb on - strand, within GFF657at 339.095 kb on - strand, within GFF657at 339.095 kb on - strand, within GFF657at 339.095 kb on - strand, within GFF657at 339.205 kb on + strand, within GFF657at 339.364 kb on + strand, within GFF657at 339.364 kb on + strand, within GFF657at 339.670 kb on + strand, within GFF657at 339.769 kb on + strand, within GFF657at 339.769 kb on + strand, within GFF657

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3
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335,754 + GFF655 0.48 +0.1
335,754 + GFF655 0.48 +0.4
335,754 + GFF655 0.48 +0.2
335,754 + GFF655 0.48 -0.2
335,754 + GFF655 0.48 +0.6
335,755 - GFF655 0.48 +0.1
336,832 - +0.3
336,832 - -0.2
336,918 + GFF656 0.13 -0.2
336,918 + GFF656 0.13 -0.1
336,919 - GFF656 0.13 +0.3
336,978 + GFF656 0.16 +0.1
336,978 + GFF656 0.16 -0.6
336,978 + GFF656 0.16 +0.9
336,978 + GFF656 0.16 -0.3
336,978 + GFF656 0.16 -1.4
336,978 + GFF656 0.16 +1.4
336,978 + GFF656 0.16 -2.6
336,978 + GFF656 0.16 +1.0
336,979 - GFF656 0.16 +0.2
336,979 - GFF656 0.16 -0.0
336,979 - GFF656 0.16 +0.2
337,227 + GFF656 0.28 -0.0
337,228 - GFF656 0.28 -0.2
337,228 - GFF656 0.28 -0.8
337,308 + GFF656 0.32 +1.1
337,309 - GFF656 0.32 -0.0
337,320 + GFF656 0.32 -0.6
337,509 + GFF656 0.41 -0.4
337,509 + GFF656 0.41 -0.5
337,509 + GFF656 0.41 +0.3
337,509 + GFF656 0.41 -0.0
337,509 + GFF656 0.41 -0.0
337,510 - GFF656 0.41 +1.4
337,510 - GFF656 0.41 -0.3
337,510 - GFF656 0.41 -0.5
337,510 - GFF656 0.41 -0.9
337,579 - GFF656 0.44 -0.4
337,579 - GFF656 0.44 +0.7
337,620 + GFF656 0.46 -0.2
337,621 - GFF656 0.46 +1.0
337,621 - GFF656 0.46 -0.5
337,633 - GFF656 0.47 -0.1
337,828 - GFF656 0.56 +0.5
337,935 + GFF656 0.61 -0.6
337,936 - GFF656 0.61 +1.5
337,959 + GFF656 0.62 -0.9
338,162 + GFF656 0.71 +0.6
338,244 + GFF656 0.75 -0.4
338,245 - GFF656 0.75 +0.2
338,316 + GFF656 0.79 +0.2
338,317 - GFF656 0.79 +0.2
338,317 - GFF656 0.79 -0.7
338,317 - GFF656 0.79 -0.8
338,317 - GFF656 0.79 +0.1
338,337 + GFF656 0.80 -0.2
338,337 + GFF656 0.80 -0.5
338,337 + GFF656 0.80 -0.2
338,337 + GFF656 0.80 -0.0
338,337 + GFF656 0.80 -0.2
338,337 + GFF656 0.80 -1.2
338,337 + GFF656 0.80 -0.3
338,338 - GFF656 0.80 +1.0
338,338 - GFF656 0.80 +1.2
338,338 - GFF656 0.80 -0.5
338,338 - GFF656 0.80 -1.1
338,338 - GFF656 0.80 -0.6
338,371 - GFF656 0.81 -0.7
338,418 + GFF656 0.83 -0.1
338,419 - GFF656 0.83 -0.5
338,419 - GFF656 0.83 -0.4
338,419 - GFF656 0.83 +0.4
338,466 + GFF656 0.86 -0.3
338,466 + GFF656 0.86 +0.3
338,466 + GFF656 0.86 +0.5
338,467 - GFF656 0.86 +0.0
338,607 + -0.2
338,608 - +0.6
338,608 - -0.0
339,019 + GFF657 0.10 -0.1
339,020 - GFF657 0.11 +1.0
339,094 + GFF657 0.14 -0.0
339,094 + GFF657 0.14 +0.5
339,094 + GFF657 0.14 +0.1
339,095 - GFF657 0.14 -0.2
339,095 - GFF657 0.14 +0.2
339,095 - GFF657 0.14 -0.2
339,095 - GFF657 0.14 -1.5
339,205 + GFF657 0.19 +1.1
339,364 + GFF657 0.27 +0.5
339,364 + GFF657 0.27 +0.1
339,670 + GFF657 0.42 -0.6
339,769 + GFF657 0.46 +0.3
339,769 + GFF657 0.46 -0.2

Or see this region's nucleotide sequence