Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF61 and GFF62 are separated by 102 nucleotides GFF62 and GFF63 are separated by 178 nucleotides
GFF61 - hypothetical protein, at 61,756 to 62,721
GFF61
GFF62 - Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1), at 62,824 to 63,867
GFF62
GFF63 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 64,046 to 64,735
GFF63
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1 at 61.928 kb on + strand, within GFF61 at 62.352 kb on - strand, within GFF61 at 62.825 kb on + strand at 63.011 kb on + strand, within GFF62 at 63.011 kb on + strand, within GFF62 at 63.012 kb on - strand, within GFF62 at 63.012 kb on - strand, within GFF62 at 63.200 kb on + strand, within GFF62 at 63.201 kb on - strand, within GFF62 at 63.207 kb on - strand, within GFF62 at 63.207 kb on - strand, within GFF62 at 63.482 kb on + strand, within GFF62 at 63.482 kb on + strand, within GFF62 at 63.482 kb on + strand, within GFF62 at 63.482 kb on + strand, within GFF62 at 63.482 kb on + strand, within GFF62 at 63.483 kb on - strand, within GFF62 at 63.483 kb on - strand, within GFF62 at 63.483 kb on - strand, within GFF62 at 63.483 kb on - strand, within GFF62 at 63.696 kb on - strand, within GFF62 at 63.906 kb on - strand at 63.917 kb on - strand at 63.917 kb on - strand at 63.917 kb on - strand at 64.015 kb on - strand at 64.015 kb on - strand at 64.031 kb on + strand at 64.350 kb on - strand, within GFF63
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 61,928 + GFF61 0.18 +0.3 62,352 - GFF61 0.62 +0.5 62,825 + -0.6 63,011 + GFF62 0.18 -0.9 63,011 + GFF62 0.18 -0.4 63,012 - GFF62 0.18 +0.4 63,012 - GFF62 0.18 +0.6 63,200 + GFF62 0.36 -0.0 63,201 - GFF62 0.36 +0.1 63,207 - GFF62 0.37 +0.6 63,207 - GFF62 0.37 -0.9 63,482 + GFF62 0.63 -0.4 63,482 + GFF62 0.63 -0.4 63,482 + GFF62 0.63 -0.0 63,482 + GFF62 0.63 -0.1 63,482 + GFF62 0.63 +0.0 63,483 - GFF62 0.63 +0.4 63,483 - GFF62 0.63 +0.6 63,483 - GFF62 0.63 +0.2 63,483 - GFF62 0.63 +0.2 63,696 - GFF62 0.84 +0.7 63,906 - -1.5 63,917 - +0.3 63,917 - +0.1 63,917 - -1.2 64,015 - -2.2 64,015 - -0.1 64,031 + +0.3 64,350 - GFF63 0.44 +0.2
Or see this region's nucleotide sequence