Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF616 and GFF617 are separated by 74 nucleotides GFF617 and GFF618 are separated by 16 nucleotides GFF618 and GFF1074 are separated by 65 nucleotides GFF1074 and GFF619 are separated by 37 nucleotides
GFF616 - Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8), at 292,697 to 294,019
GFF616
GFF617 - Putative methyltransferase associated with DUF414, at 294,094 to 294,726
GFF617
GFF618 - YaeQ protein, at 294,743 to 295,303
GFF618
GFF1074 - tRNA-Met-CAT, at 295,369 to 295,442
GFF1074
GFF619 - Enoyl-CoA hydratase (EC 4.2.1.17), at 295,480 to 296,268
GFF619
Position (kb) 294
295 Strain fitness (log2 ratio) -1
0
1
2
3 at 293.199 kb on + strand, within GFF616 at 293.199 kb on + strand, within GFF616 at 293.199 kb on + strand, within GFF616 at 293.199 kb on + strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.451 kb on + strand, within GFF616 at 293.451 kb on + strand, within GFF616 at 293.796 kb on + strand, within GFF616 at 293.865 kb on + strand, within GFF616 at 293.865 kb on + strand, within GFF616 at 293.866 kb on - strand, within GFF616 at 293.952 kb on + strand at 293.953 kb on - strand at 294.056 kb on + strand at 294.071 kb on - strand at 294.071 kb on - strand at 294.077 kb on + strand at 294.185 kb on + strand, within GFF617 at 294.186 kb on - strand, within GFF617 at 294.410 kb on + strand, within GFF617 at 294.410 kb on + strand, within GFF617 at 294.410 kb on + strand, within GFF617 at 294.411 kb on - strand, within GFF617 at 294.411 kb on - strand, within GFF617 at 294.411 kb on - strand, within GFF617 at 294.411 kb on - strand, within GFF617 at 294.411 kb on - strand, within GFF617 at 294.584 kb on + strand, within GFF617 at 294.662 kb on + strand, within GFF617 at 294.663 kb on - strand at 294.744 kb on + strand at 294.744 kb on + strand at 294.744 kb on + strand at 294.744 kb on + strand at 294.745 kb on - strand at 294.745 kb on - strand at 294.745 kb on - strand at 294.963 kb on + strand, within GFF618 at 294.963 kb on + strand, within GFF618 at 294.963 kb on + strand, within GFF618 at 294.963 kb on + strand, within GFF618 at 295.239 kb on + strand, within GFF618 at 295.239 kb on + strand, within GFF618 at 295.239 kb on + strand, within GFF618 at 295.240 kb on - strand, within GFF618 at 295.460 kb on - strand at 295.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 293,199 + GFF616 0.38 +3.0 293,199 + GFF616 0.38 -0.0 293,199 + GFF616 0.38 -0.2 293,199 + GFF616 0.38 -0.1 293,200 - GFF616 0.38 +1.4 293,200 - GFF616 0.38 -0.8 293,200 - GFF616 0.38 -1.2 293,200 - GFF616 0.38 -0.1 293,200 - GFF616 0.38 -0.5 293,200 - GFF616 0.38 -0.5 293,451 + GFF616 0.57 -0.7 293,451 + GFF616 0.57 +0.6 293,796 + GFF616 0.83 -0.3 293,865 + GFF616 0.88 +1.2 293,865 + GFF616 0.88 -0.8 293,866 - GFF616 0.88 +0.3 293,952 + +1.4 293,953 - -0.1 294,056 + -0.0 294,071 - -0.2 294,071 - +0.4 294,077 + +0.4 294,185 + GFF617 0.14 +1.0 294,186 - GFF617 0.15 -0.4 294,410 + GFF617 0.50 -0.4 294,410 + GFF617 0.50 +0.6 294,410 + GFF617 0.50 +0.5 294,411 - GFF617 0.50 +0.8 294,411 - GFF617 0.50 -0.1 294,411 - GFF617 0.50 -1.6 294,411 - GFF617 0.50 +0.1 294,411 - GFF617 0.50 -0.0 294,584 + GFF617 0.77 +0.3 294,662 + GFF617 0.90 -0.3 294,663 - +0.3 294,744 + +0.0 294,744 + -0.1 294,744 + +0.3 294,744 + -0.2 294,745 - +0.1 294,745 - -0.3 294,745 - +0.5 294,963 + GFF618 0.39 -0.5 294,963 + GFF618 0.39 -0.4 294,963 + GFF618 0.39 +0.6 294,963 + GFF618 0.39 +0.1 295,239 + GFF618 0.88 +0.1 295,239 + GFF618 0.88 +0.8 295,239 + GFF618 0.88 -0.1 295,240 - GFF618 0.89 +1.4 295,460 - -0.2 295,460 - -0.5
Or see this region's nucleotide sequence