Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF616

Experiment: Ying_OrganicAcid7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF614 and GFF615 are separated by 94 nucleotidesGFF615 and GFF616 overlap by 4 nucleotidesGFF616 and GFF617 are separated by 74 nucleotidesGFF617 and GFF618 are separated by 16 nucleotides GFF614 - COG0012: Predicted GTPase, probable translation, at 291,482 to 291,868 GFF614 GFF615 - Transcriptional regulator, TetR family, at 291,963 to 292,700 GFF615 GFF616 - Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8), at 292,697 to 294,019 GFF616 GFF617 - Putative methyltransferase associated with DUF414, at 294,094 to 294,726 GFF617 GFF618 - YaeQ protein, at 294,743 to 295,303 GFF618 Position (kb) 292 293 294 295Strain fitness (log2 ratio) -1 0 1 2 3at 291.871 kb on + strandat 291.871 kb on + strandat 291.871 kb on + strandat 291.871 kb on + strandat 291.871 kb on + strandat 291.871 kb on + strandat 291.872 kb on - strandat 291.872 kb on - strandat 291.872 kb on - strandat 291.872 kb on - strandat 291.872 kb on - strandat 291.872 kb on - strandat 291.872 kb on - strandat 291.872 kb on - strandat 292.027 kb on + strandat 292.027 kb on + strandat 292.027 kb on + strandat 292.028 kb on - strandat 292.028 kb on - strandat 292.028 kb on - strandat 292.255 kb on + strand, within GFF615at 292.255 kb on + strand, within GFF615at 292.256 kb on - strand, within GFF615at 292.256 kb on - strand, within GFF615at 292.408 kb on + strand, within GFF615at 292.525 kb on + strand, within GFF615at 292.525 kb on + strand, within GFF615at 292.526 kb on - strand, within GFF615at 292.531 kb on + strand, within GFF615at 292.531 kb on + strand, within GFF615at 292.531 kb on + strand, within GFF615at 292.531 kb on + strand, within GFF615at 292.531 kb on + strand, within GFF615at 292.532 kb on - strand, within GFF615at 292.532 kb on - strand, within GFF615at 292.532 kb on - strand, within GFF615at 292.532 kb on - strand, within GFF615at 292.755 kb on + strandat 292.756 kb on - strandat 292.756 kb on - strandat 292.756 kb on - strandat 292.818 kb on + strandat 292.819 kb on - strandat 293.043 kb on + strand, within GFF616at 293.044 kb on - strand, within GFF616at 293.044 kb on - strand, within GFF616at 293.199 kb on + strand, within GFF616at 293.199 kb on + strand, within GFF616at 293.199 kb on + strand, within GFF616at 293.199 kb on + strand, within GFF616at 293.200 kb on - strand, within GFF616at 293.200 kb on - strand, within GFF616at 293.200 kb on - strand, within GFF616at 293.200 kb on - strand, within GFF616at 293.200 kb on - strand, within GFF616at 293.200 kb on - strand, within GFF616at 293.451 kb on + strand, within GFF616at 293.451 kb on + strand, within GFF616at 293.796 kb on + strand, within GFF616at 293.865 kb on + strand, within GFF616at 293.865 kb on + strand, within GFF616at 293.866 kb on - strand, within GFF616at 293.952 kb on + strandat 293.953 kb on - strandat 294.056 kb on + strandat 294.071 kb on - strandat 294.071 kb on - strandat 294.077 kb on + strandat 294.185 kb on + strand, within GFF617at 294.186 kb on - strand, within GFF617at 294.410 kb on + strand, within GFF617at 294.410 kb on + strand, within GFF617at 294.410 kb on + strand, within GFF617at 294.411 kb on - strand, within GFF617at 294.411 kb on - strand, within GFF617at 294.411 kb on - strand, within GFF617at 294.411 kb on - strand, within GFF617at 294.411 kb on - strand, within GFF617at 294.584 kb on + strand, within GFF617at 294.662 kb on + strand, within GFF617at 294.663 kb on - strandat 294.744 kb on + strandat 294.744 kb on + strandat 294.744 kb on + strandat 294.744 kb on + strandat 294.745 kb on - strandat 294.745 kb on - strandat 294.745 kb on - strandat 294.963 kb on + strand, within GFF618at 294.963 kb on + strand, within GFF618at 294.963 kb on + strand, within GFF618at 294.963 kb on + strand, within GFF618

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3
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291,871 + -0.1
291,871 + -0.2
291,871 + -0.4
291,871 + +1.4
291,871 + -0.7
291,871 + -0.1
291,872 - -1.1
291,872 - -0.1
291,872 - +3.2
291,872 - -1.0
291,872 - -1.4
291,872 - -0.3
291,872 - -0.1
291,872 - -0.6
292,027 + -0.2
292,027 + +0.4
292,027 + +0.6
292,028 - -0.0
292,028 - +0.4
292,028 - +0.2
292,255 + GFF615 0.40 -1.6
292,255 + GFF615 0.40 +0.0
292,256 - GFF615 0.40 -0.1
292,256 - GFF615 0.40 -0.4
292,408 + GFF615 0.60 -0.6
292,525 + GFF615 0.76 -0.3
292,525 + GFF615 0.76 -0.2
292,526 - GFF615 0.76 +0.7
292,531 + GFF615 0.77 -0.6
292,531 + GFF615 0.77 +0.1
292,531 + GFF615 0.77 -0.1
292,531 + GFF615 0.77 -0.3
292,531 + GFF615 0.77 -0.6
292,532 - GFF615 0.77 +1.2
292,532 - GFF615 0.77 -1.2
292,532 - GFF615 0.77 +0.3
292,532 - GFF615 0.77 -0.2
292,755 + -0.4
292,756 - -0.3
292,756 - +0.5
292,756 - +0.4
292,818 + +0.6
292,819 - +1.4
293,043 + GFF616 0.26 -0.4
293,044 - GFF616 0.26 +0.1
293,044 - GFF616 0.26 -0.5
293,199 + GFF616 0.38 +3.0
293,199 + GFF616 0.38 -0.0
293,199 + GFF616 0.38 -0.2
293,199 + GFF616 0.38 -0.1
293,200 - GFF616 0.38 +1.4
293,200 - GFF616 0.38 -0.8
293,200 - GFF616 0.38 -1.2
293,200 - GFF616 0.38 -0.1
293,200 - GFF616 0.38 -0.5
293,200 - GFF616 0.38 -0.5
293,451 + GFF616 0.57 -0.7
293,451 + GFF616 0.57 +0.6
293,796 + GFF616 0.83 -0.3
293,865 + GFF616 0.88 +1.2
293,865 + GFF616 0.88 -0.8
293,866 - GFF616 0.88 +0.3
293,952 + +1.4
293,953 - -0.1
294,056 + -0.0
294,071 - -0.2
294,071 - +0.4
294,077 + +0.4
294,185 + GFF617 0.14 +1.0
294,186 - GFF617 0.15 -0.4
294,410 + GFF617 0.50 -0.4
294,410 + GFF617 0.50 +0.6
294,410 + GFF617 0.50 +0.5
294,411 - GFF617 0.50 +0.8
294,411 - GFF617 0.50 -0.1
294,411 - GFF617 0.50 -1.6
294,411 - GFF617 0.50 +0.1
294,411 - GFF617 0.50 -0.0
294,584 + GFF617 0.77 +0.3
294,662 + GFF617 0.90 -0.3
294,663 - +0.3
294,744 + +0.0
294,744 + -0.1
294,744 + +0.3
294,744 + -0.2
294,745 - +0.1
294,745 - -0.3
294,745 - +0.5
294,963 + GFF618 0.39 -0.5
294,963 + GFF618 0.39 -0.4
294,963 + GFF618 0.39 +0.6
294,963 + GFF618 0.39 +0.1

Or see this region's nucleotide sequence