Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF613 and GFF614 are separated by 91 nucleotides GFF614 and GFF615 are separated by 94 nucleotides GFF615 and GFF616 overlap by 4 nucleotides
GFF613 - tRNA-i(6)A37 methylthiotransferase, at 290,035 to 291,390
GFF613
GFF614 - COG0012: Predicted GTPase, probable translation, at 291,482 to 291,868
GFF614
GFF615 - Transcriptional regulator, TetR family, at 291,963 to 292,700
GFF615
GFF616 - Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8), at 292,697 to 294,019
GFF616
Position (kb) 291
292
293 Strain fitness (log2 ratio) -1
0
1
2
3 at 291.104 kb on + strand, within GFF613 at 291.104 kb on + strand, within GFF613 at 291.105 kb on - strand, within GFF613 at 291.296 kb on + strand at 291.296 kb on + strand at 291.296 kb on + strand at 291.528 kb on + strand, within GFF614 at 291.528 kb on + strand, within GFF614 at 291.528 kb on + strand, within GFF614 at 291.529 kb on - strand, within GFF614 at 291.529 kb on - strand, within GFF614 at 291.529 kb on - strand, within GFF614 at 291.529 kb on - strand, within GFF614 at 291.624 kb on + strand, within GFF614 at 291.624 kb on + strand, within GFF614 at 291.624 kb on + strand, within GFF614 at 291.625 kb on - strand, within GFF614 at 291.625 kb on - strand, within GFF614 at 291.871 kb on + strand at 291.871 kb on + strand at 291.871 kb on + strand at 291.871 kb on + strand at 291.871 kb on + strand at 291.871 kb on + strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 292.027 kb on + strand at 292.027 kb on + strand at 292.027 kb on + strand at 292.028 kb on - strand at 292.028 kb on - strand at 292.028 kb on - strand at 292.255 kb on + strand, within GFF615 at 292.255 kb on + strand, within GFF615 at 292.256 kb on - strand, within GFF615 at 292.256 kb on - strand, within GFF615 at 292.408 kb on + strand, within GFF615 at 292.525 kb on + strand, within GFF615 at 292.525 kb on + strand, within GFF615 at 292.526 kb on - strand, within GFF615 at 292.531 kb on + strand, within GFF615 at 292.531 kb on + strand, within GFF615 at 292.531 kb on + strand, within GFF615 at 292.531 kb on + strand, within GFF615 at 292.531 kb on + strand, within GFF615 at 292.532 kb on - strand, within GFF615 at 292.532 kb on - strand, within GFF615 at 292.532 kb on - strand, within GFF615 at 292.532 kb on - strand, within GFF615 at 292.755 kb on + strand at 292.756 kb on - strand at 292.756 kb on - strand at 292.756 kb on - strand at 292.818 kb on + strand at 292.819 kb on - strand at 293.043 kb on + strand, within GFF616 at 293.044 kb on - strand, within GFF616 at 293.044 kb on - strand, within GFF616 at 293.199 kb on + strand, within GFF616 at 293.199 kb on + strand, within GFF616 at 293.199 kb on + strand, within GFF616 at 293.199 kb on + strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.451 kb on + strand, within GFF616 at 293.451 kb on + strand, within GFF616
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 291,104 + GFF613 0.79 -0.2 291,104 + GFF613 0.79 -0.6 291,105 - GFF613 0.79 -0.4 291,296 + +0.5 291,296 + +0.8 291,296 + +1.7 291,528 + GFF614 0.12 -0.6 291,528 + GFF614 0.12 +1.4 291,528 + GFF614 0.12 +1.0 291,529 - GFF614 0.12 +0.6 291,529 - GFF614 0.12 +0.1 291,529 - GFF614 0.12 +0.3 291,529 - GFF614 0.12 +1.1 291,624 + GFF614 0.37 -0.2 291,624 + GFF614 0.37 +0.9 291,624 + GFF614 0.37 -1.2 291,625 - GFF614 0.37 -0.2 291,625 - GFF614 0.37 +1.1 291,871 + -0.1 291,871 + -0.2 291,871 + -0.4 291,871 + +1.4 291,871 + -0.7 291,871 + -0.1 291,872 - -1.1 291,872 - -0.1 291,872 - +3.2 291,872 - -1.0 291,872 - -1.4 291,872 - -0.3 291,872 - -0.1 291,872 - -0.6 292,027 + -0.2 292,027 + +0.4 292,027 + +0.6 292,028 - -0.0 292,028 - +0.4 292,028 - +0.2 292,255 + GFF615 0.40 -1.6 292,255 + GFF615 0.40 +0.0 292,256 - GFF615 0.40 -0.1 292,256 - GFF615 0.40 -0.4 292,408 + GFF615 0.60 -0.6 292,525 + GFF615 0.76 -0.3 292,525 + GFF615 0.76 -0.2 292,526 - GFF615 0.76 +0.7 292,531 + GFF615 0.77 -0.6 292,531 + GFF615 0.77 +0.1 292,531 + GFF615 0.77 -0.1 292,531 + GFF615 0.77 -0.3 292,531 + GFF615 0.77 -0.6 292,532 - GFF615 0.77 +1.2 292,532 - GFF615 0.77 -1.2 292,532 - GFF615 0.77 +0.3 292,532 - GFF615 0.77 -0.2 292,755 + -0.4 292,756 - -0.3 292,756 - +0.5 292,756 - +0.4 292,818 + +0.6 292,819 - +1.4 293,043 + GFF616 0.26 -0.4 293,044 - GFF616 0.26 +0.1 293,044 - GFF616 0.26 -0.5 293,199 + GFF616 0.38 +3.0 293,199 + GFF616 0.38 -0.0 293,199 + GFF616 0.38 -0.2 293,199 + GFF616 0.38 -0.1 293,200 - GFF616 0.38 +1.4 293,200 - GFF616 0.38 -0.8 293,200 - GFF616 0.38 -1.2 293,200 - GFF616 0.38 -0.1 293,200 - GFF616 0.38 -0.5 293,200 - GFF616 0.38 -0.5 293,451 + GFF616 0.57 -0.7 293,451 + GFF616 0.57 +0.6
Or see this region's nucleotide sequence