Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5684

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
2,704,662	-		GFF5683	0.24	+0.3
2,704,829	+		GFF5683	0.48	+0.3
2,704,830	-		GFF5683	0.48	+1.1
2,704,886	+		GFF5683	0.56	+0.2
2,704,887	-		GFF5683	0.56	+1.0
2,704,934	+		GFF5683	0.63	-0.2
2,704,935	-		GFF5683	0.63	+0.6
2,705,030	+		GFF5683	0.76	+0.9
2,705,031	-		GFF5683	0.77	+0.2
2,705,031	-		GFF5683	0.77	+0.8
2,705,031	-		GFF5683	0.77	-0.7
2,705,151	+				-1.5
2,705,152	-				+0.3
2,705,232	-				-0.7
2,705,262	+				-1.1
2,705,262	+				+0.5
2,705,262	+				+0.8
2,705,263	-				-0.8
2,705,263	-				-1.0
2,705,263	-				-1.4
2,705,263	-				+0.6
2,705,456	+				+0.9
2,705,616	-		GFF5684	0.20	-0.2
2,705,849	+		GFF5684	0.36	+0.3
2,705,850	-		GFF5684	0.36	+0.3
2,706,143	+		GFF5684	0.57	+1.1
2,706,143	+		GFF5684	0.57	-0.1
2,706,366	-		GFF5684	0.72	+0.8
2,706,479	+		GFF5684	0.80	-1.3
2,706,479	+		GFF5684	0.80	+0.1
2,707,171	+		GFF5685	0.13	+0.8
2,707,172	-		GFF5685	0.13	-1.6
2,707,172	-		GFF5685	0.13	+0.8
2,707,172	-		GFF5685	0.13	-0.5
2,707,318	+		GFF5685	0.17	-0.1
2,707,492	+		GFF5685	0.23	-0.1
2,707,634	-		GFF5685	0.27	-0.2
2,707,634	-		GFF5685	0.27	+0.3
2,707,675	+		GFF5685	0.28	-0.5
2,707,675	+		GFF5685	0.28	-0.7
2,707,676	-		GFF5685	0.28	+0.9