Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5667

Experiment: Ying_OrganicAcid7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5666 and GFF5667 overlap by 4 nucleotidesGFF5667 and GFF5668 overlap by 4 nucleotidesGFF5668 and GFF5669 are separated by 2 nucleotides GFF5666 - Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10), at 2,690,022 to 2,691,500 GFF5666 GFF5667 - 6-hexanolactone hydrolase, at 2,691,497 to 2,692,399 GFF5667 GFF5668 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,692,396 to 2,693,145 GFF5668 GFF5669 - Enoyl-CoA hydratase (EC 4.2.1.17), at 2,693,148 to 2,693,984 GFF5669 Position (kb) 2691 2692 2693Strain fitness (log2 ratio) -1 0 1at 2690.518 kb on + strand, within GFF5666at 2690.519 kb on - strand, within GFF5666at 2691.470 kb on - strandat 2691.470 kb on - strandat 2692.188 kb on + strand, within GFF5667

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3
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2,690,518 + GFF5666 0.34 -0.0
2,690,519 - GFF5666 0.34 -0.2
2,691,470 - +1.3
2,691,470 - -0.4
2,692,188 + GFF5667 0.77 +0.7

Or see this region's nucleotide sequence