Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5523

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
2,527,808	+		GFF5522	0.88	+0.3
2,527,808	+		GFF5522	0.88	-0.4
2,527,809	-		GFF5522	0.88	-0.5
2,528,228	-				+0.4
2,528,228	-				+0.6
2,528,901	+				+0.5
2,528,901	+				-0.2
2,528,901	+				-0.2
2,528,901	+				-0.3
2,528,901	+				-0.2
2,528,902	-				-0.6
2,528,968	+				+0.6
2,528,968	+				-0.5
2,528,969	-				+0.2
2,528,969	-				+0.4
2,528,970	+				-1.7
2,529,290	-		GFF5524	0.25	-0.1
2,529,290	-		GFF5524	0.25	+1.0
2,529,290	-		GFF5524	0.25	-0.4
2,529,304	+		GFF5524	0.27	-0.2
2,529,397	+		GFF5524	0.36	+0.7
2,529,397	+		GFF5524	0.36	-0.1
2,529,398	-		GFF5524	0.36	-0.1
2,529,406	+		GFF5524	0.37	-0.6
2,529,406	+		GFF5524	0.37	+0.6
2,529,407	-		GFF5524	0.37	+0.2
2,529,407	-		GFF5524	0.37	+0.4
2,529,722	-		GFF5524	0.68	+0.8
2,529,722	-		GFF5524	0.68	-0.2
2,529,760	+		GFF5524	0.72	+0.4
2,529,760	+		GFF5524	0.72	-0.3
2,529,760	+		GFF5524	0.72	-0.2
2,529,761	-		GFF5524	0.72	-1.2
2,529,761	-		GFF5524	0.72	-0.1
2,529,761	-		GFF5524	0.72	+1.1