Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5376

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
2,377,407	+				-0.5
2,377,407	+				+0.3
2,377,408	-				-1.4
2,377,408	-				-0.6
2,377,408	-				-0.1
2,377,769	+		GFF5375	0.50	+0.3
2,377,770	-		GFF5375	0.50	+0.4
2,377,770	-		GFF5375	0.50	-0.9
2,377,781	+		GFF5375	0.52	+0.8
2,377,896	-		GFF5375	0.64	+0.3
2,378,360	+				+0.2
2,378,459	-				+0.4
2,379,067	-		GFF5376	0.59	+0.3
2,379,273	+		GFF5376	0.76	+0.5
2,379,730	+		GFF5377	0.22	+0.6
2,379,730	+		GFF5377	0.22	+1.3
2,379,820	+		GFF5377	0.37	+0.5
2,379,821	-		GFF5377	0.38	+0.7
2,379,919	+		GFF5377	0.54	+1.6
2,379,919	+		GFF5377	0.54	+0.1
2,379,919	+		GFF5377	0.54	+0.5
2,379,920	-		GFF5377	0.55	+1.3
2,379,920	-		GFF5377	0.55	+1.0
2,380,165	+				+0.7
2,380,165	+				+0.1
2,380,165	+				+0.1
2,380,165	+				+1.1
2,380,166	-				+1.4
2,380,166	-				+0.4
2,380,166	-				+0.7
2,380,166	-				+0.4
2,380,166	-				-0.1
2,380,183	+				-0.1
2,380,381	-		GFF5378	0.18	+0.4
2,380,476	+		GFF5378	0.27	+2.2
2,380,477	-		GFF5378	0.27	+0.4
2,380,477	-		GFF5378	0.27	+0.9