Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5317

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
2,323,758	+				+0.6
2,324,009	+		GFF5315	0.55	-0.3
2,324,036	+		GFF5315	0.62	-1.0
2,324,036	+		GFF5315	0.62	-0.4
2,324,460	-		GFF5316	0.65	+0.8
2,325,350	+				-0.4
2,325,398	-				+0.3
2,325,423	+				-0.1
2,325,424	-				-0.6
2,325,424	-				-0.9
2,325,434	+				+0.1
2,325,434	+				-0.2
2,325,435	-				+0.6
2,325,435	-				-1.6
2,325,435	-				+0.4
2,325,435	-				+0.6
2,325,435	-				-0.2
2,325,676	+		GFF5318	0.17	-0.1
2,325,677	-		GFF5318	0.18	+0.1
2,325,677	-		GFF5318	0.18	-2.1
2,325,677	-		GFF5318	0.18	+0.3
2,325,677	-		GFF5318	0.18	-0.7
2,325,688	+		GFF5318	0.21	+0.0
2,325,688	+		GFF5318	0.21	-2.7
2,325,688	+		GFF5318	0.21	+0.6
2,325,689	-		GFF5318	0.21	-0.4
2,325,844	+		GFF5318	0.64	+2.4
2,325,892	+		GFF5318	0.77	-0.6
2,325,892	+		GFF5318	0.77	+0.2
2,325,892	+		GFF5318	0.77	-1.2
2,325,892	+		GFF5318	0.77	+0.1
2,325,893	-		GFF5318	0.77	-0.0
2,325,893	-		GFF5318	0.77	-0.2
2,325,893	-		GFF5318	0.77	-0.1
2,325,893	-		GFF5318	0.77	-1.8
2,325,898	+		GFF5318	0.79	-0.6
2,325,899	-		GFF5318	0.79	-0.1
2,325,899	-		GFF5318	0.79	-0.7
2,326,328	-		GFF5319	0.76	+1.0