Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5300

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
2,312,591	-		GFF5299	0.65	-0.8
2,313,035	-		GFF5299	0.86	-0.1
2,313,094	+		GFF5299	0.89	+0.3
2,313,094	+		GFF5299	0.89	-2.6
2,313,095	-		GFF5299	0.89	+1.4
2,313,752	+		GFF5300	0.25	-0.6
2,313,945	-		GFF5300	0.38	-0.2
2,313,986	+		GFF5300	0.41	+1.4
2,313,987	-		GFF5300	0.41	-0.9
2,314,229	+		GFF5300	0.58	-0.6
2,314,229	+		GFF5300	0.58	+0.1
2,314,229	+		GFF5300	0.58	+0.0
2,314,230	-		GFF5300	0.58	+0.2
2,314,476	-		GFF5300	0.75	-0.0
2,314,637	+		GFF5300	0.86	-1.6
2,314,637	+		GFF5300	0.86	+1.0
2,314,637	+		GFF5300	0.86	-0.3
2,314,637	+		GFF5300	0.86	-0.2
2,314,638	-		GFF5300	0.86	-1.4
2,314,638	-		GFF5300	0.86	-0.5
2,315,098	+		GFF5301	0.44	-1.5
2,315,099	-		GFF5301	0.44	+0.1
2,315,099	-		GFF5301	0.44	+1.0
2,315,176	+		GFF5301	0.57	+1.4
2,315,460	-				+0.3
2,315,460	-				+1.4
2,315,526	-		GFF5302	0.37	+0.1
2,315,611	+		GFF5302	0.84	-0.3
2,315,646	-				-0.4
2,315,660	+				+0.3
2,315,661	-				+0.4