Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF529 and GFF530 overlap by 14 nucleotides GFF530 and GFF531 are separated by 112 nucleotides GFF531 and GFF532 are separated by 32 nucleotides
GFF529 - N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47), at 196,649 to 197,965
GFF529
GFF530 - NAD(FAD)-utilizing dehydrogenase, sll0175 homolog, at 197,952 to 199,775
GFF530
GFF531 - hypothetical protein, at 199,888 to 200,478
GFF531
GFF532 - Na+ driven multidrug efflux pump, at 200,511 to 201,866
GFF532
Position (kb) 197
198
199
200 Strain fitness (log2 ratio) -1
0
1
2
3 at 197.018 kb on + strand, within GFF529 at 197.018 kb on + strand, within GFF529 at 197.018 kb on + strand, within GFF529 at 197.019 kb on - strand, within GFF529 at 197.019 kb on - strand, within GFF529 at 197.019 kb on - strand, within GFF529 at 197.019 kb on - strand, within GFF529 at 197.022 kb on + strand, within GFF529 at 197.022 kb on + strand, within GFF529 at 197.022 kb on + strand, within GFF529 at 197.023 kb on - strand, within GFF529 at 197.258 kb on + strand, within GFF529 at 197.258 kb on + strand, within GFF529 at 197.258 kb on + strand, within GFF529 at 197.259 kb on - strand, within GFF529 at 197.516 kb on + strand, within GFF529 at 197.516 kb on + strand, within GFF529 at 197.517 kb on - strand, within GFF529 at 197.517 kb on - strand, within GFF529 at 197.819 kb on + strand, within GFF529 at 197.819 kb on + strand, within GFF529 at 197.820 kb on - strand, within GFF529 at 198.220 kb on + strand, within GFF530 at 198.346 kb on + strand, within GFF530 at 198.346 kb on + strand, within GFF530 at 198.346 kb on + strand, within GFF530 at 198.346 kb on + strand, within GFF530 at 198.347 kb on - strand, within GFF530 at 198.347 kb on - strand, within GFF530 at 198.347 kb on - strand, within GFF530 at 198.367 kb on + strand, within GFF530 at 198.367 kb on + strand, within GFF530 at 198.586 kb on + strand, within GFF530 at 198.670 kb on + strand, within GFF530 at 198.709 kb on + strand, within GFF530 at 198.709 kb on + strand, within GFF530 at 198.709 kb on + strand, within GFF530 at 198.709 kb on + strand, within GFF530 at 199.096 kb on + strand, within GFF530 at 199.180 kb on + strand, within GFF530 at 199.181 kb on - strand, within GFF530 at 199.181 kb on - strand, within GFF530 at 199.223 kb on - strand, within GFF530 at 199.223 kb on - strand, within GFF530 at 199.543 kb on + strand, within GFF530 at 199.543 kb on + strand, within GFF530 at 199.543 kb on + strand, within GFF530 at 199.544 kb on - strand, within GFF530 at 199.544 kb on - strand, within GFF530 at 199.544 kb on - strand, within GFF530 at 199.544 kb on - strand, within GFF530 at 199.821 kb on - strand at 199.821 kb on - strand at 199.955 kb on - strand, within GFF531 at 199.955 kb on - strand, within GFF531 at 200.063 kb on - strand, within GFF531 at 200.121 kb on - strand, within GFF531 at 200.121 kb on - strand, within GFF531 at 200.121 kb on - strand, within GFF531 at 200.121 kb on - strand, within GFF531 at 200.121 kb on - strand, within GFF531
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 197,018 + GFF529 0.28 -0.4 197,018 + GFF529 0.28 -0.1 197,018 + GFF529 0.28 -0.6 197,019 - GFF529 0.28 +0.8 197,019 - GFF529 0.28 -0.4 197,019 - GFF529 0.28 -0.0 197,019 - GFF529 0.28 +0.3 197,022 + GFF529 0.28 +0.4 197,022 + GFF529 0.28 +0.7 197,022 + GFF529 0.28 +1.1 197,023 - GFF529 0.28 +0.0 197,258 + GFF529 0.46 -0.2 197,258 + GFF529 0.46 -0.7 197,258 + GFF529 0.46 +0.8 197,259 - GFF529 0.46 +0.4 197,516 + GFF529 0.66 +1.4 197,516 + GFF529 0.66 +1.5 197,517 - GFF529 0.66 -0.3 197,517 - GFF529 0.66 +0.1 197,819 + GFF529 0.89 -0.2 197,819 + GFF529 0.89 +0.4 197,820 - GFF529 0.89 -0.4 198,220 + GFF530 0.15 -0.6 198,346 + GFF530 0.22 -0.5 198,346 + GFF530 0.22 +1.4 198,346 + GFF530 0.22 -0.1 198,346 + GFF530 0.22 -1.5 198,347 - GFF530 0.22 -0.2 198,347 - GFF530 0.22 +0.1 198,347 - GFF530 0.22 -0.0 198,367 + GFF530 0.23 -0.5 198,367 + GFF530 0.23 -0.1 198,586 + GFF530 0.35 -0.0 198,670 + GFF530 0.39 +2.8 198,709 + GFF530 0.42 -0.3 198,709 + GFF530 0.42 -0.5 198,709 + GFF530 0.42 -0.5 198,709 + GFF530 0.42 +0.4 199,096 + GFF530 0.63 -0.5 199,180 + GFF530 0.67 -1.6 199,181 - GFF530 0.67 -0.4 199,181 - GFF530 0.67 +0.0 199,223 - GFF530 0.70 +0.8 199,223 - GFF530 0.70 +0.6 199,543 + GFF530 0.87 -1.1 199,543 + GFF530 0.87 -0.7 199,543 + GFF530 0.87 -0.1 199,544 - GFF530 0.87 -0.1 199,544 - GFF530 0.87 -0.2 199,544 - GFF530 0.87 -0.9 199,544 - GFF530 0.87 -0.2 199,821 - -1.3 199,821 - +2.1 199,955 - GFF531 0.11 +0.4 199,955 - GFF531 0.11 +1.0 200,063 - GFF531 0.30 -0.0 200,121 - GFF531 0.39 -0.5 200,121 - GFF531 0.39 +0.4 200,121 - GFF531 0.39 +0.1 200,121 - GFF531 0.39 -0.6 200,121 - GFF531 0.39 -0.3
Or see this region's nucleotide sequence