Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5196

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
2,212,544	+		GFF5805	0.37	+1.4
2,212,544	+		GFF5805	0.37	+0.3
2,212,545	-		GFF5805	0.38	+0.9
2,212,545	-		GFF5805	0.38	-0.4
2,212,545	-		GFF5805	0.38	+0.9
2,212,545	-		GFF5805	0.38	-0.2
2,212,545	-		GFF5805	0.38	+0.8
2,212,545	-		GFF5805	0.38	-0.4
2,212,545	-		GFF5805	0.38	+0.4
2,212,569	+		GFF5805	0.72	+0.2
2,212,569	+		GFF5805	0.72	+1.0
2,212,569	+		GFF5805	0.72	+0.5
2,212,570	-		GFF5805	0.73	-0.6
2,212,570	-		GFF5805	0.73	+0.2
2,212,580	+		GFF5805	0.87	-0.3
2,212,580	+		GFF5805	0.87	-0.5
2,212,581	-		GFF5805	0.89	-0.2
2,212,581	-		GFF5805	0.89	+0.8
2,212,581	-		GFF5805	0.89	+1.3
2,212,581	-		GFF5805	0.89	-0.2
2,212,581	-		GFF5805	0.89	+1.6
2,212,581	-		GFF5805	0.89	-0.4
2,212,815	-		GFF5195	0.33	-0.6
2,212,815	-		GFF5195	0.33	-1.6
2,213,392	+				-0.7
2,213,392	+				+0.4
2,213,392	+				+1.0
2,213,392	+				-0.0
2,213,393	-				+0.8
2,213,393	-				-1.1
2,213,393	-				+0.2
2,213,407	+				+0.5
2,213,408	-				-0.7
2,213,984	-				-0.2
2,214,126	+		GFF5197	0.11	-0.2
2,214,126	+		GFF5197	0.11	-0.3
2,214,126	+		GFF5197	0.11	-0.5
2,214,126	+		GFF5197	0.11	+0.4
2,214,126	+		GFF5197	0.11	+0.5
2,214,126	+		GFF5197	0.11	+0.0
2,214,126	+		GFF5197	0.11	-1.8
2,214,126	+		GFF5197	0.11	+1.1
2,214,126	+		GFF5197	0.11	-0.2
2,214,127	-		GFF5197	0.11	-0.3
2,214,127	-		GFF5197	0.11	-0.9
2,214,127	-		GFF5197	0.11	+0.3
2,214,127	-		GFF5197	0.11	-0.6
2,214,330	+		GFF5197	0.40	+1.4
2,214,331	-		GFF5197	0.40	+0.6
2,214,331	-		GFF5197	0.40	-0.6
2,214,331	-		GFF5197	0.40	-0.2
2,214,489	+		GFF5197	0.62	-0.4
2,214,523	-		GFF5197	0.67	+0.0
2,214,798	-				+0.9
2,214,810	-				+0.1
2,214,816	+				-0.2
2,214,862	+				+0.8
2,215,018	+		GFF5198	0.30	-0.3