Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5193

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
2,209,661	+		GFF5192	0.46	+0.5
2,209,661	+		GFF5192	0.46	+0.4
2,209,661	+		GFF5192	0.46	+0.1
2,209,662	-		GFF5192	0.46	+0.4
2,209,662	-		GFF5192	0.46	-0.9
2,209,664	+		GFF5192	0.47	+0.1
2,209,664	+		GFF5192	0.47	+0.3
2,209,664	+		GFF5192	0.47	+0.8
2,209,664	+		GFF5192	0.47	-0.9
2,209,664	+		GFF5192	0.47	-0.6
2,209,664	+		GFF5192	0.47	-0.3
2,209,665	-		GFF5192	0.47	+0.3
2,209,665	-		GFF5192	0.47	+0.5
2,209,665	-		GFF5192	0.47	-0.5
2,209,665	-		GFF5192	0.47	+0.8
2,209,772	+		GFF5192	0.56	+0.2
2,209,773	-		GFF5192	0.56	+0.2
2,209,778	+		GFF5192	0.56	+0.1
2,209,778	+		GFF5192	0.56	-0.9
2,209,778	+		GFF5192	0.56	-0.1
2,209,778	+		GFF5192	0.56	-0.2
2,209,778	+		GFF5192	0.56	+0.2
2,209,779	-		GFF5192	0.56	+0.4
2,209,779	-		GFF5192	0.56	-1.6
2,209,779	-		GFF5192	0.56	-0.0
2,209,884	-		GFF5192	0.65	-0.3
2,209,920	-		GFF5192	0.68	+0.4
2,210,154	-		GFF5192	0.88	-0.4
2,210,154	-		GFF5192	0.88	+0.1
2,210,299	+				-0.2
2,210,299	+				-0.3
2,210,300	-				+1.0
2,210,300	-				-1.1
2,210,348	+				-0.6
2,210,348	+				+1.4
2,210,348	+				+0.0
2,210,354	+				-1.9
2,210,354	+				-0.2
2,210,355	-				-0.2
2,210,423	+				+0.7
2,210,424	-		GFF5193	0.10	-0.0
2,210,672	+		GFF5193	0.31	+1.1
2,210,672	+		GFF5193	0.31	-0.2
2,210,699	+		GFF5193	0.34	-0.7
2,210,762	+		GFF5193	0.39	-0.3
2,210,762	+		GFF5193	0.39	+0.8
2,210,763	-		GFF5193	0.39	+1.1
2,211,032	+		GFF5193	0.62	-0.2
2,211,032	+		GFF5193	0.62	-2.2
2,211,033	-		GFF5193	0.62	+1.4
2,211,033	-		GFF5193	0.62	+1.4
2,211,149	+		GFF5193	0.72	+0.1
2,211,200	+		GFF5193	0.77	+0.2
2,211,200	+		GFF5193	0.77	-0.2
2,211,201	-		GFF5193	0.77	+0.4
2,211,201	-		GFF5193	0.77	-1.4
2,211,201	-		GFF5193	0.77	+1.4
2,211,201	-		GFF5193	0.77	+0.8
2,211,201	-		GFF5193	0.77	-0.2
2,211,201	-		GFF5193	0.77	+0.6
2,211,201	-		GFF5193	0.77	+0.3
2,211,363	-				-0.1
2,211,392	+				+0.1
2,211,392	+				-0.8
2,211,527	-				+0.6
2,211,528	+				+0.3
2,211,541	+				+0.2
2,211,541	+				-0.1
2,211,545	+				+0.8
2,211,546	-				-0.2
2,211,546	-				-0.5
2,211,580	+				+0.1
2,211,580	+				+0.1
2,211,580	+				-1.0
2,211,941	-		GFF5194	0.41	-1.2
2,211,997	+		GFF5194	0.47	-0.3
2,211,997	+		GFF5194	0.47	-0.4