Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4648

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
1,596,924	+		GFF4646	0.22	+0.0
1,596,924	+		GFF4646	0.22	+1.0
1,596,925	-		GFF4646	0.23	+1.0
1,596,925	-		GFF4646	0.23	-0.6
1,596,927	+		GFF4646	0.24	+0.6
1,596,928	-		GFF4646	0.25	+0.7
1,596,928	-		GFF4646	0.25	-0.0
1,597,169	-		GFF4647	0.73	-0.3
1,597,169	-		GFF4647	0.73	-0.2
1,597,169	-		GFF4647	0.73	-0.2
1,597,205	+				-0.3
1,597,456	+				-0.0
1,597,457	-				+0.6
1,597,457	-				+0.8
1,597,467	+				+0.2
1,597,467	+				-0.3
1,597,468	-				+0.0
1,597,468	-				-0.4
1,597,468	-				-0.1
1,597,479	+				+0.3
1,597,479	+				-0.1
1,597,479	+				+0.7
1,597,479	+				+0.5
1,597,480	-				-1.5
1,597,480	-				+0.6
1,597,480	-				+0.1
1,597,480	-				-0.1
1,597,480	-				+0.0
1,597,580	+				-0.8
1,597,580	+				+1.0
1,597,580	+				-1.5
1,597,580	+				+0.1
1,597,580	+				-0.8
1,597,580	+				-1.0
1,597,580	+				+0.1
1,597,580	+				-0.3
1,597,581	-				+0.1
1,597,581	-				-0.5
1,597,581	-				-1.6
1,597,581	-				+1.6
1,597,581	-				-0.2
1,597,611	+				+0.9
1,597,612	-				-0.3
1,597,641	-				+0.3
1,597,641	-				-0.5
1,597,770	-				+0.4
1,597,770	-				+0.4
1,597,949	+		GFF4648	0.17	+0.8
1,597,950	-		GFF4648	0.17	-0.3
1,597,950	-		GFF4648	0.17	-0.6
1,597,977	-		GFF4648	0.20	+0.1
1,598,523	-		GFF4648	0.71	+1.4
1,598,570	+		GFF4648	0.76	-0.0
1,598,609	+		GFF4648	0.80	+0.4
1,598,645	+		GFF4648	0.83	+1.4
1,598,646	-		GFF4648	0.83	+0.3
1,598,845	+				-0.3
1,599,098	+		GFF4649	0.11	-0.2
1,599,098	+		GFF4649	0.11	+0.8
1,599,099	-		GFF4649	0.11	-0.2
1,599,224	+		GFF4649	0.16	+0.3
1,599,224	+		GFF4649	0.16	+0.4
1,599,572	+		GFF4649	0.30	+0.1
1,599,572	+		GFF4649	0.30	-0.3
1,599,582	-		GFF4649	0.31	-0.1
1,599,582	-		GFF4649	0.31	-0.3