Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4562

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
1,499,284	+		GFF4561	0.43	+0.4
1,499,285	-		GFF4561	0.43	-0.2
1,499,285	-		GFF4561	0.43	+0.0
1,499,285	-		GFF4561	0.43	-0.1
1,499,285	-		GFF4561	0.43	+0.4
1,499,755	+		GFF4561	0.85	-1.0
1,499,756	-		GFF4561	0.85	+0.2
1,499,756	-		GFF4561	0.85	-0.7
1,499,756	-		GFF4561	0.85	-1.0
1,499,756	-		GFF4561	0.85	+0.6
1,499,756	-		GFF4561	0.85	-1.0
1,499,756	-		GFF4561	0.85	+0.0
1,499,756	-		GFF4561	0.85	-0.1
1,499,756	-		GFF4561	0.85	+0.8
1,499,756	-		GFF4561	0.85	+0.5
1,499,756	-		GFF4561	0.85	+0.0
1,499,756	-		GFF4561	0.85	+0.7
1,499,756	-		GFF4561	0.85	+0.2
1,500,176	+				+0.2
1,500,176	+				+0.2
1,500,176	+				+0.3
1,500,176	+				-1.1
1,500,177	-				-0.5
1,500,177	-				+0.4
1,500,177	-				-0.2
1,500,177	-				-0.6
1,500,177	-				-0.2
1,500,177	-				+1.4
1,500,177	-				-0.3
1,500,177	-				+0.8
1,500,447	+		GFF4562	0.16	+0.1
1,500,448	-		GFF4562	0.16	-1.6
1,500,540	-		GFF4562	0.19	-0.2
1,500,944	+		GFF4562	0.32	-2.6
1,500,944	+		GFF4562	0.32	-0.6
1,500,945	-		GFF4562	0.32	-1.2
1,501,061	+		GFF4562	0.36	+0.5
1,501,061	+		GFF4562	0.36	-1.2
1,501,061	+		GFF4562	0.36	+0.4
1,501,061	+		GFF4562	0.36	+0.4
1,501,061	+		GFF4562	0.36	+1.0
1,501,061	+		GFF4562	0.36	-0.2
1,501,061	+		GFF4562	0.36	+0.5
1,501,061	+		GFF4562	0.36	+0.2
1,501,061	+		GFF4562	0.36	+1.1
1,501,062	-		GFF4562	0.36	+0.8
1,501,062	-		GFF4562	0.36	-0.3
1,501,062	-		GFF4562	0.36	+0.9
1,501,062	-		GFF4562	0.36	+0.5
1,501,062	-		GFF4562	0.36	-0.7
1,501,062	-		GFF4562	0.36	-0.6
1,501,064	+		GFF4562	0.36	+0.4
1,501,064	+		GFF4562	0.36	+0.5
1,501,064	+		GFF4562	0.36	+0.0
1,501,064	+		GFF4562	0.36	-0.3
1,501,065	-		GFF4562	0.36	-0.7
1,501,065	-		GFF4562	0.36	+0.3
1,501,065	-		GFF4562	0.36	+0.4
1,501,065	-		GFF4562	0.36	+0.2
1,501,065	-		GFF4562	0.36	-0.1
1,501,065	-		GFF4562	0.36	-1.0
1,501,065	-		GFF4562	0.36	-2.5
1,501,190	+		GFF4562	0.40	-0.6
1,501,391	+		GFF4562	0.46	+0.2
1,501,391	+		GFF4562	0.46	+0.1
1,501,392	-		GFF4562	0.46	-0.6
1,501,392	-		GFF4562	0.46	-0.0
1,501,392	-		GFF4562	0.46	+0.2
1,501,508	+		GFF4562	0.50	-0.4
1,501,508	+		GFF4562	0.50	+0.3
1,501,509	-		GFF4562	0.50	+0.4
1,501,509	-		GFF4562	0.50	-0.4
1,501,509	-		GFF4562	0.50	+0.6
1,501,509	-		GFF4562	0.50	-0.1
1,501,509	-		GFF4562	0.50	-1.2
1,501,751	+		GFF4562	0.58	-0.3
1,501,751	+		GFF4562	0.58	-1.2
1,501,751	+		GFF4562	0.58	-0.4
1,501,751	+		GFF4562	0.58	+0.0
1,501,871	+		GFF4562	0.61	-0.1
1,501,958	+		GFF4562	0.64	+0.0
1,501,958	+		GFF4562	0.64	-0.4
1,501,958	+		GFF4562	0.64	-0.5
1,501,958	+		GFF4562	0.64	-0.5
1,501,958	+		GFF4562	0.64	-0.8
1,501,958	+		GFF4562	0.64	+0.1
1,501,958	+		GFF4562	0.64	+1.0
1,501,958	+		GFF4562	0.64	+1.4
1,501,958	+		GFF4562	0.64	+0.4
1,501,958	+		GFF4562	0.64	+0.0
1,501,958	+		GFF4562	0.64	-0.7
1,501,958	+		GFF4562	0.64	-1.3
1,501,959	-		GFF4562	0.64	+0.1
1,501,959	-		GFF4562	0.64	+1.9
1,501,959	-		GFF4562	0.64	+0.4
1,501,959	-		GFF4562	0.64	-0.8
1,501,959	-		GFF4562	0.64	-0.5
1,501,959	-		GFF4562	0.64	+0.1
1,502,180	+		GFF4562	0.71	+0.4
1,502,180	+		GFF4562	0.71	-0.2
1,502,570	+		GFF4562	0.83	-0.0
1,502,570	+		GFF4562	0.83	-0.6
1,502,570	+		GFF4562	0.83	-0.1
1,502,570	+		GFF4562	0.83	+0.3
1,502,570	+		GFF4562	0.83	+0.2
1,502,570	+		GFF4562	0.83	-1.0
1,502,571	-		GFF4562	0.83	-0.9
1,502,571	-		GFF4562	0.83	-0.6
1,502,571	-		GFF4562	0.83	+0.0
1,502,571	-		GFF4562	0.83	-0.6
1,502,571	-		GFF4562	0.83	-1.3
1,502,571	-		GFF4562	0.83	-0.8
1,502,571	-		GFF4562	0.83	-0.1
1,503,121	+				-0.6
1,503,122	-				-0.0
1,503,122	-				+0.7
1,503,122	-				+0.7
1,503,122	-				-0.2
1,503,163	-				+1.2
1,503,380	+				-0.5
1,503,380	+				+0.1
1,503,381	-				+0.3
1,503,381	-				-0.0
1,503,381	-				+0.4
1,503,381	-				-0.2
1,503,407	+				+1.1
1,503,408	-				-0.6
1,503,716	+		GFF4563	0.18	-1.0
1,503,717	-		GFF4563	0.18	+0.2
1,503,758	+		GFF4563	0.19	-0.8
1,503,758	+		GFF4563	0.19	+0.1
1,503,759	-		GFF4563	0.19	+0.3
1,503,759	-		GFF4563	0.19	-2.0
1,503,759	-		GFF4563	0.19	-0.2
1,503,759	-		GFF4563	0.19	+0.3
1,503,938	+		GFF4563	0.26	-0.4
1,503,938	+		GFF4563	0.26	-0.1
1,503,938	+		GFF4563	0.26	+0.6
1,503,938	+		GFF4563	0.26	+0.0
1,503,939	-		GFF4563	0.26	+0.9
1,503,939	-		GFF4563	0.26	+0.3
1,503,939	-		GFF4563	0.26	-0.3
1,503,939	-		GFF4563	0.26	+0.7
1,504,083	-		GFF4563	0.31	-1.0
1,504,088	+		GFF4563	0.32	-2.1