Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF445 and GFF446 overlap by 17 nucleotides GFF446 and GFF447 overlap by 45 nucleotides GFF447 and GFF448 are separated by 32 nucleotides GFF448 and GFF449 are separated by 2 nucleotides GFF449 and GFF450 are separated by 76 nucleotides GFF450 and GFF451 are separated by 100 nucleotides
GFF445 - Acetolactate synthase large subunit (EC 2.2.1.6), at 114,371 to 116,251
GFF445
GFF446 - hypothetical protein, at 116,235 to 116,384
GFF446
GFF447 - Transcriptional regulator, AraC family, at 116,340 to 117,143
GFF447
GFF448 - hypothetical protein, at 117,176 to 118,393
GFF448
GFF449 - hypothetical protein, at 118,396 to 118,677
GFF449
GFF450 - PhnB protein, at 118,754 to 119,119
GFF450
GFF451 - PhnB protein, at 119,220 to 119,651
GFF451
Position (kb) 117
118
119 Strain fitness (log2 ratio) -2
-1
0
1
2 at 116.325 kb on + strand, within GFF446 at 116.326 kb on - strand, within GFF446 at 116.326 kb on - strand, within GFF446 at 116.453 kb on - strand, within GFF447 at 116.511 kb on + strand, within GFF447 at 116.511 kb on + strand, within GFF447 at 116.512 kb on - strand, within GFF447 at 116.512 kb on - strand, within GFF447 at 116.874 kb on + strand, within GFF447 at 116.997 kb on + strand, within GFF447 at 117.054 kb on + strand, within GFF447 at 117.164 kb on + strand at 117.165 kb on - strand at 117.165 kb on - strand at 117.732 kb on - strand, within GFF448 at 117.732 kb on - strand, within GFF448 at 117.786 kb on - strand, within GFF448 at 117.810 kb on - strand, within GFF448 at 117.810 kb on - strand, within GFF448 at 118.032 kb on - strand, within GFF448 at 118.121 kb on + strand, within GFF448 at 118.121 kb on + strand, within GFF448 at 118.121 kb on + strand, within GFF448 at 118.122 kb on - strand, within GFF448 at 118.122 kb on - strand, within GFF448 at 118.122 kb on - strand, within GFF448 at 118.122 kb on - strand, within GFF448 at 118.122 kb on - strand, within GFF448 at 118.122 kb on - strand, within GFF448 at 118.247 kb on + strand, within GFF448 at 118.247 kb on + strand, within GFF448 at 118.266 kb on - strand, within GFF448 at 118.266 kb on - strand, within GFF448 at 118.266 kb on - strand, within GFF448 at 118.361 kb on + strand at 118.361 kb on + strand at 118.362 kb on - strand at 118.421 kb on + strand at 118.421 kb on + strand at 118.443 kb on - strand, within GFF449 at 118.582 kb on + strand, within GFF449 at 118.582 kb on + strand, within GFF449 at 118.583 kb on - strand, within GFF449 at 118.583 kb on - strand, within GFF449 at 118.583 kb on - strand, within GFF449 at 118.583 kb on - strand, within GFF449 at 118.829 kb on + strand, within GFF450 at 118.829 kb on + strand, within GFF450 at 118.830 kb on - strand, within GFF450 at 119.314 kb on - strand, within GFF451
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 116,325 + GFF446 0.60 -0.1 116,326 - GFF446 0.61 -0.5 116,326 - GFF446 0.61 +0.0 116,453 - GFF447 0.14 +0.0 116,511 + GFF447 0.21 +0.1 116,511 + GFF447 0.21 -0.1 116,512 - GFF447 0.21 +0.1 116,512 - GFF447 0.21 -0.8 116,874 + GFF447 0.66 +0.9 116,997 + GFF447 0.82 +0.9 117,054 + GFF447 0.89 +0.6 117,164 + +1.1 117,165 - +0.3 117,165 - -0.2 117,732 - GFF448 0.46 +0.5 117,732 - GFF448 0.46 +0.0 117,786 - GFF448 0.50 +0.5 117,810 - GFF448 0.52 +0.4 117,810 - GFF448 0.52 -0.1 118,032 - GFF448 0.70 -0.1 118,121 + GFF448 0.78 +0.3 118,121 + GFF448 0.78 +1.4 118,121 + GFF448 0.78 +0.3 118,122 - GFF448 0.78 +1.9 118,122 - GFF448 0.78 -0.6 118,122 - GFF448 0.78 +0.0 118,122 - GFF448 0.78 +0.1 118,122 - GFF448 0.78 -0.4 118,122 - GFF448 0.78 +0.3 118,247 + GFF448 0.88 +0.0 118,247 + GFF448 0.88 +0.4 118,266 - GFF448 0.89 -0.1 118,266 - GFF448 0.89 +0.3 118,266 - GFF448 0.89 +1.1 118,361 + +0.0 118,361 + -0.1 118,362 - +0.0 118,421 + -0.3 118,421 + +0.3 118,443 - GFF449 0.17 -1.8 118,582 + GFF449 0.66 +0.8 118,582 + GFF449 0.66 +0.0 118,583 - GFF449 0.66 +0.2 118,583 - GFF449 0.66 -0.3 118,583 - GFF449 0.66 -2.4 118,583 - GFF449 0.66 +0.8 118,829 + GFF450 0.20 -0.2 118,829 + GFF450 0.20 -1.0 118,830 - GFF450 0.21 -0.5 119,314 - GFF451 0.22 +0.0
Or see this region's nucleotide sequence