Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF405 and GFF406 are separated by 156 nucleotides GFF406 and GFF407 are separated by 76 nucleotides GFF407 and GFF408 overlap by 6 nucleotides GFF408 and GFF409 are separated by 76 nucleotides
GFF405 - hypothetical protein, at 73,725 to 74,936
GFF405
GFF406 - Polyhydroxyalkanoate granule-associated protein PhaF, at 75,093 to 75,623
GFF406
GFF407 - hypothetical protein, at 75,700 to 75,813
GFF407
GFF408 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 75,808 to 77,793
GFF408
GFF409 - Acetylglutamate kinase (EC 2.7.2.8), at 77,870 to 78,769
GFF409
Position (kb) 75
76
77
78 Strain fitness (log2 ratio) -1
0
1 at 74.869 kb on + strand at 74.869 kb on + strand at 74.870 kb on - strand at 75.664 kb on - strand at 75.688 kb on - strand at 75.814 kb on + strand at 75.814 kb on + strand at 75.815 kb on - strand at 75.815 kb on - strand at 75.815 kb on - strand at 75.991 kb on - strand at 76.076 kb on - strand, within GFF408 at 76.076 kb on - strand, within GFF408 at 76.207 kb on + strand, within GFF408 at 76.264 kb on + strand, within GFF408 at 76.264 kb on + strand, within GFF408 at 76.265 kb on - strand, within GFF408 at 76.330 kb on + strand, within GFF408 at 76.393 kb on + strand, within GFF408 at 76.396 kb on + strand, within GFF408 at 76.397 kb on - strand, within GFF408 at 76.720 kb on + strand, within GFF408 at 76.778 kb on - strand, within GFF408 at 76.778 kb on - strand, within GFF408 at 76.856 kb on - strand, within GFF408 at 76.877 kb on - strand, within GFF408 at 77.086 kb on + strand, within GFF408 at 77.087 kb on - strand, within GFF408 at 77.230 kb on + strand, within GFF408 at 77.230 kb on + strand, within GFF408 at 77.231 kb on - strand, within GFF408 at 77.272 kb on + strand, within GFF408 at 77.273 kb on - strand, within GFF408 at 77.273 kb on - strand, within GFF408 at 77.273 kb on - strand, within GFF408 at 77.392 kb on + strand, within GFF408 at 77.524 kb on + strand, within GFF408 at 77.856 kb on + strand at 77.943 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 74,869 + -0.5 74,869 + +0.2 74,870 - +0.0 75,664 - +0.1 75,688 - -0.6 75,814 + +0.1 75,814 + -0.4 75,815 - +0.7 75,815 - -0.1 75,815 - -0.4 75,991 - +0.8 76,076 - GFF408 0.13 -0.1 76,076 - GFF408 0.13 -0.2 76,207 + GFF408 0.20 -0.1 76,264 + GFF408 0.23 -0.0 76,264 + GFF408 0.23 +1.1 76,265 - GFF408 0.23 -0.0 76,330 + GFF408 0.26 +0.0 76,393 + GFF408 0.29 -0.1 76,396 + GFF408 0.30 -0.4 76,397 - GFF408 0.30 +0.9 76,720 + GFF408 0.46 +0.5 76,778 - GFF408 0.49 -1.3 76,778 - GFF408 0.49 -0.4 76,856 - GFF408 0.53 +1.4 76,877 - GFF408 0.54 +0.2 77,086 + GFF408 0.64 -0.2 77,087 - GFF408 0.64 -0.6 77,230 + GFF408 0.72 -0.7 77,230 + GFF408 0.72 +0.1 77,231 - GFF408 0.72 +0.0 77,272 + GFF408 0.74 +0.6 77,273 - GFF408 0.74 -0.7 77,273 - GFF408 0.74 -1.2 77,273 - GFF408 0.74 -1.0 77,392 + GFF408 0.80 -1.0 77,524 + GFF408 0.86 -0.0 77,856 + +0.1 77,943 - -1.2
Or see this region's nucleotide sequence