Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4065 and GFF4066 are separated by 22 nucleotides GFF4066 and GFF4067 overlap by 14 nucleotides GFF4067 and GFF4068 are separated by 52 nucleotides GFF4068 and GFF4069 overlap by 4 nucleotides GFF4069 and GFF4070 overlap by 14 nucleotides
GFF4065 - RNA polymerase sigma factor for flagellar operon, at 981,756 to 982,481
GFF4065
GFF4066 - Flagellar motor rotation protein MotA, at 982,504 to 983,424
GFF4066
GFF4067 - Flagellar motor rotation protein MotB, at 983,411 to 984,433
GFF4067
GFF4068 - hypothetical protein, at 984,486 to 984,770
GFF4068
GFF4069 - hypothetical protein, at 984,767 to 985,192
GFF4069
GFF4070 - Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-), at 985,179 to 985,904
GFF4070
Position (kb) 983
984
985 Strain fitness (log2 ratio) -2
-1
0
1
2 at 982.750 kb on + strand, within GFF4066 at 982.750 kb on + strand, within GFF4066 at 982.750 kb on + strand, within GFF4066 at 982.838 kb on - strand, within GFF4066 at 983.156 kb on - strand, within GFF4066 at 983.768 kb on + strand, within GFF4067 at 983.768 kb on + strand, within GFF4067 at 983.769 kb on - strand, within GFF4067 at 983.868 kb on - strand, within GFF4067 at 985.062 kb on - strand, within GFF4069 at 985.136 kb on + strand, within GFF4069 at 985.179 kb on - strand at 985.179 kb on - strand at 985.179 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 982,750 + GFF4066 0.27 -0.2 982,750 + GFF4066 0.27 +0.9 982,750 + GFF4066 0.27 -0.5 982,838 - GFF4066 0.36 +2.4 983,156 - GFF4066 0.71 -1.9 983,768 + GFF4067 0.35 +0.1 983,768 + GFF4067 0.35 -1.0 983,769 - GFF4067 0.35 -0.1 983,868 - GFF4067 0.45 +0.4 985,062 - GFF4069 0.69 -0.0 985,136 + GFF4069 0.87 +1.4 985,179 - +0.4 985,179 - -0.4 985,179 - +0.3
Or see this region's nucleotide sequence